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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052103 through 18771 annotations produced 1 hits



(CG32103):

Annotation Number : CG32103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052103
Gbrowse : chr3L:12396604-12407942 (-) // 100.0 //
Probeset : 1629806_a_at
Accessions : protein= NP_729802; /// NP_729803; /// NP_996067;, nucleotide= NM_168498; /// NM_168499; /// NM_206345;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic
FlyMine data for FBgn0052103.
Homophila reports that CG32103 is a close match (1e-11) to human gene UCP1 (NP_068605), a gene associated with {Obesity, susceptibility to}, 601665 (3).
BioGrid reports that CG32103 interacts with CG7340 CG9749 .
VDRC has 2 RNAi stocks for FBgn0052103 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 74 of 4 1.30Up
Head214 144 of 4 1.30Up
Eye456 294 of 4 2.79Up
Thoracicoabdominal ganglion349 94 of 4 2.10Up
Salivary gland337 164 of 4 2.06Up
Crop220 94 of 4 1.30Up
Midgut278 44 of 4 1.70Up
Tubule1170 2784 of 4 7.20Up
Hindgut327 224 of 4 2.00Up
Heart700 354 of 4 4.28Up
Fat body530 1224 of 4 3.24Up
Ovary170 94 of 4 1.00None
Testis94 24 of 4 0.60Down
Male accessory glands69 64 of 4 0.40Down
Virgin spermatheca828 584 of 4 5.07Up
Mated spermatheca593 234 of 4 3.63Up
Adult carcass301 264 of 4 1.80Up
Larval CNS147 204 of 4 0.90None
Larval Salivary gland158 54 of 4 0.97None
Larval midgut261 204 of 4 1.60Up
Larval tubule110 44 of 4 0.70Down
Larval hindgut284 114 of 4 1.74Up
Larval fat body473 74 of 4 2.90Up
Larval trachea301 294 of 4 1.84Up
Larval carcass354 254 of 4 2.16Up
S2 cells (growing)316 94 of 4 1.94Up
Whole fly163 44 of 4

Looking for FBgn0052103. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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