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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052104 through 18771 annotations produced 1 hits



(CG32104):

Annotation Number : CG32104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052104
Gbrowse : chr3L:12386902-12392391 (-) // 100.0 //
Probeset : 1629995_at
Accessions : protein= NP_648573;, nucleotide= NM_140316;
Interpro : "0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inte
FlyMine data for FBgn0052104.
BioGrid reports that CG32104 interacts with CG3610 CG9638 CG8368 .
VDRC has 3 RNAi stocks for FBgn0052104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 14 of 4 0.90None
Head33 ± 54 of 4 1.00None
Eye13 ± 14 of 4 0.42Down
Thoracicoabdominal ganglion32 ± 34 of 4 1.00None
Salivary gland15 ± 50 of 4 0.45Down
Crop26 ± 34 of 4 0.80None
Midgut17 ± 14 of 4 0.50Down
Tubule21 ± 24 of 4 0.60Down
Hindgut23 ± 34 of 4 0.70Down
Heart10 ± 13 of 4 0.33Down
Fat body9 ± 70 of 4 0.27Down
Ovary53 ± 34 of 4 1.60Up
Testis23 ± 14 of 4 0.70Down
Male accessory glands26 ± 13 of 4 0.80Down
Virgin spermatheca32 ± 14 of 4 0.97None
Mated spermatheca34 ± 34 of 4 1.05None
Adult carcass13 ± 40 of 4 0.40Down
Larval CNS61 ± 74 of 4 1.84Up
Larval Salivary gland25 ± 22 of 4 0.75Down
Larval midgut9 ± 20 of 4 0.29Down
Larval tubule37 ± 14 of 4 1.10None
Larval hindgut26 ± 24 of 4 0.81None
Larval fat body18 ± 21 of 4 0.60Down
Larval trachea31 ± 64 of 4 0.96None
Larval carcass24 ± 14 of 4 0.74Down
S2 cells (growing)33 ± 34 of 4 1.01None
Whole fly33 ± 24 of 4

Looking for FBgn0052104. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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