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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052105 through 18771 annotations produced 1 hits



(CG32105):

Annotation Number : CG32105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052105
Gbrowse : chr3L:12322335-12329006 (+) // 100.0 //
Probeset : 1625864_at
Accessions : protein= NP_729801;, nucleotide= NM_168497;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from sequen
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0052105.
BDGP gene expression has embryonic in situ data for CG32105: 51 pix of staining in 19 body parts.
Homophila reports that CG32105 is a close match (5e-40) to human gene LHX3 (NP_055379), a gene associated with Pituitary hormone deficiency, combined, with rigid cervical spine, 262600 (3).
BioGrid reports that CG32105 interacts with CG5137 CG6756 CG3924 CG7104 CG9423 CG9888 .
TRiP has 1 RNAi stocks for FBgn0052105 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 14 of 410.00Up
Head16 ± 12 of 4 2.00Up
Eye3 ± 00 of 4 0.43Down
Thoracicoabdominal ganglion71 ± 14 of 4 9.00Up
Salivary gland5 ± 20 of 4 0.64None
Crop3 ± 10 of 4 0.50Down
Midgut11 ± 10 of 4 1.50None
Tubule3 ± 00 of 4 0.40Down
Hindgut4 ± 00 of 4 0.60None
Heart1 ± 00 of 4 0.23Down
Fat body11 ± 00 of 4 1.43None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands4 ± 20 of 4 0.60None
Virgin spermatheca5 ± 20 of 4 0.67None
Mated spermatheca6 ± 20 of 4 0.76None
Adult carcass5 ± 20 of 4 0.70None
Larval CNS96 ± 64 of 412.20Up
Larval Salivary gland4 ± 20 of 4 0.56None
Larval midgut7 ± 20 of 4 0.96None
Larval tubule2 ± 10 of 4 0.30None
Larval hindgut2 ± 10 of 4 0.36Down
Larval fat body16 ± 21 of 4 2.00Up
Larval trachea2 ± 30 of 4 0.34None
Larval carcass7 ± 11 of 4 0.91None
S2 cells (growing)2 ± 10 of 4 0.27Down
Whole fly8 ± 10 of 4

Looking for FBgn0052105. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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