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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052113 through 18771 annotations produced 1 hits



(CG32113):

Annotation Number : CG32113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052113
Gbrowse : chr3L:12748245-12761661 (+) // 100.0 //
Probeset : 1632287_at
Accessions : protein= NP_729825;, nucleotide= NM_168512;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0052113.
Homophila reports that CG32113 is a close match (2e-26) to human gene CHAC;VPS13A (NP_056001), a gene associated with Choreoacanthocytosis, 200150 (3).
TRiP has 1 RNAi stocks for FBgn0052113 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 34 of 4 1.60Up
Head70 ± 54 of 4 1.40Up
Eye54 ± 24 of 4 1.11None
Thoracicoabdominal ganglion84 ± 24 of 4 1.70Up
Salivary gland94 ± 64 of 4 1.92Up
Crop86 ± 64 of 4 1.70Up
Midgut50 ± 14 of 4 1.00None
Tubule112 ± 34 of 4 2.30Up
Hindgut75 ± 24 of 4 1.50Up
Heart73 ± 14 of 4 1.49Up
Fat body72 ± 44 of 4 1.47Up
Ovary60 ± 24 of 4 1.20None
Testis75 ± 54 of 4 1.50Up
Male accessory glands50 ± 34 of 4 1.00None
Virgin spermatheca72 ± 34 of 4 1.47Up
Mated spermatheca71 ± 04 of 4 1.45Up
Adult carcass92 ± 54 of 4 1.90Up
Larval CNS62 ± 14 of 4 1.28Up
Larval Salivary gland48 ± 34 of 4 0.98None
Larval midgut46 ± 34 of 4 0.94None
Larval tubule68 ± 24 of 4 1.40Up
Larval hindgut75 ± 34 of 4 1.52Up
Larval fat body77 ± 44 of 4 1.60Up
Larval trachea61 ± 54 of 4 1.25None
Larval carcass50 ± 24 of 4 1.02None
S2 cells (growing)49 ± 34 of 4 1.00None
Whole fly49 ± 44 of 4

Looking for FBgn0052113. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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