FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052115 through 18771 annotations produced 1 hits

(CG32115):

Annotation Number : CG32115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052115
Gbrowse : chr3L:12905139-12906746 (-) // 100.0 //
Probeset : 1623963_at
Accessions : protein= NP_729854;, nucleotide= NM_168529;
FlyMine data for FBgn0052115.
VDRC has 2 RNAi stocks for FBgn0052115 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 0	3 of 4	0.40	Down
Head	24 ± 2	4 of 4	1.40	Up
Eye	6 ± 3	1 of 4	0.36	Down
Thoracicoabdominal ganglion	5 ± 0	0 of 4	0.30	Down
Salivary gland	10 ± 3	0 of 4	0.60	None
Crop	2 ± 1	0 of 4	0.10	Down
Midgut	195 ± 8	4 of 4	10.80	Up
Tubule	88 ± 2	4 of 4	4.90	Up
Hindgut	36 ± 4	4 of 4	2.00	Up
Heart	39 ± 1	4 of 4	2.17	Up
Fat body	99 ± 13	4 of 4	5.52	Up
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	5 ± 2	0 of 4	0.30	Down
Virgin spermatheca	177 ± 5	4 of 4	9.84	Up
Mated spermatheca	126 ± 11	4 of 4	7.03	Up
Adult carcass	35 ± 7	4 of 4	1.90	None
Larval CNS	18 ± 0	4 of 4	1.03	None
Larval Salivary gland	3 ± 1	0 of 4	0.21	Down
Larval midgut	114 ± 3	4 of 4	6.36	Up
Larval tubule	191 ± 15	4 of 4	10.60	Up
Larval hindgut	47 ± 2	4 of 4	2.62	Up
Larval fat body	998 ± 105	4 of 4	55.30	Up
Larval trachea	4 ± 3	0 of 4	0.22	Down
Larval carcass	2 ± 1	0 of 4	0.12	Down
S2 cells (growing)	261 ± 3	4 of 4	14.50	Up
Whole fly	18 ± 1	4 of 4

Looking for FBgn0052115. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720