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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052121 through 18771 annotations produced 1 hits



/// (CG32121 /// DsecGM24596):

Annotation Number : CG32121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052121
Gbrowse : chr3L:13410502-13412558 (-) // 100.0 //
Probeset : 1628185_at
Accessions : protein= NP_001097599;, nucleotide= NM_001104129;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0052121.
VDRC has 2 RNAi stocks for FBgn0052121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40None
Head8 ± 20 of 4 0.80None
Eye1 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland2 ± 00 of 4 0.19Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.40None
Heart3 ± 10 of 4 0.32Down
Fat body7 ± 30 of 4 0.69None
Ovary0 ± 00 of 4 0.10Down
Testis18 ± 04 of 4 1.70Up
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.10Down
Mated spermatheca4 ± 00 of 4 0.38Down
Adult carcass46 ± 74 of 4 4.20Up
Larval CNS1 ± 20 of 4 0.17Down
Larval Salivary gland3 ± 20 of 4 0.34None
Larval midgut2 ± 00 of 4 0.21Down
Larval tubule5 ± 10 of 4 0.50None
Larval hindgut2 ± 10 of 4 0.23Down
Larval fat body2 ± 00 of 4 0.20Down
Larval trachea3 ± 20 of 4 0.31Down
Larval carcass6 ± 10 of 4 0.58None
S2 cells (growing)1 ± 00 of 4 0.15Down
Whole fly11 ± 21 of 4

Looking for FBgn0052121. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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