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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052137 through 18771 annotations produced 1 hits


Annotation Number : CG32137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052137
Gbrowse : chr3L:13932351-13955749 (+) // 100.0 //
Probeset : 1625087_a_at
Accessions : protein= NP_729935; /// NP_729936;, nucleotide= NM_168563; /// NM_168564;
FlyMine data for FBgn0052137.
BDGP gene expression has embryonic in situ data for CG32137: 28 pix of staining in 14 body parts.
VDRC has 4 RNAi stocks for FBgn0052137 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 24 of 4 0.70Down
Head162 34 of 4 1.20None
Eye146 84 of 4 1.04None
Thoracicoabdominal ganglion169 104 of 4 1.20None
Salivary gland149 84 of 4 1.06None
Crop255 54 of 4 1.80Up
Midgut476 214 of 4 3.40Up
Tubule305 404 of 4 2.20Up
Hindgut559 54 of 4 4.00Up
Heart26 34 of 4 0.19Down
Fat body37 64 of 4 0.26Down
Ovary54 34 of 4 0.40Down
Testis35 14 of 4 0.20Down
Male accessory glands311 114 of 4 2.20Up
Virgin spermatheca233 124 of 4 1.65Up
Mated spermatheca334 354 of 4 2.37Up
Adult carcass105 24 of 4 0.70None
Larval CNS35 44 of 4 0.25Down
Larval Salivary gland454 494 of 4 3.21Up
Larval midgut880 174 of 4 6.23Up
Larval tubule200 174 of 4 1.40Up
Larval hindgut514 214 of 4 3.64Up
Larval fat body24 33 of 4 0.20Down
Larval trachea1066 614 of 4 7.55Up
Larval carcass513 134 of 4 3.63Up
S2 cells (growing)5 10 of 4 0.04Down
Whole fly141 124 of 4

Looking for FBgn0052137. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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