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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052138 through 18771 annotations produced 1 hits



(CG32138):

Annotation Number : CG32138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052138
Gbrowse : chr3L:14046868-14063465 (+) // 100.0 //
Probeset : 1626143_a_at
Accessions : protein= NP_001137948; /// NP_729954; /// NP_729955;, nucleotide= NM_001144476; /// NM_168575; /// NM_168576;
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0003779 // actin binding // inferred from sequence o
FlyMine data for FBgn0052138.
BDGP gene expression has embryonic in situ data for CG32138: 4 pix of staining in 1 body parts.
Homophila reports that CG32138 is a close match (4e-18) to human gene DIA;DIAPH2;POF2 (NP_006720), a gene associated with Premature ovarian failure, 300511 (3).
BioGrid reports that CG32138 interacts with CG9071 .
TRiP has 1 RNAi stocks for FBgn0052138 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052138 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 24 of 4 1.00None
Head45 ± 84 of 4 0.90None
Eye31 ± 14 of 4 0.59Down
Thoracicoabdominal ganglion50 ± 44 of 4 1.00None
Salivary gland94 ± 114 of 4 1.80Up
Crop71 ± 24 of 4 1.30Up
Midgut11 ± 21 of 4 0.20Down
Tubule19 ± 12 of 4 0.40Down
Hindgut91 ± 44 of 4 1.70Up
Heart39 ± 44 of 4 0.75Down
Fat body40 ± 14 of 4 0.77Down
Ovary56 ± 44 of 4 1.10None
Testis332 ± 104 of 4 6.30Up
Male accessory glands101 ± 44 of 4 1.90Up
Virgin spermatheca30 ± 24 of 4 0.57Down
Mated spermatheca33 ± 44 of 4 0.63Down
Adult carcass56 ± 34 of 4 1.10None
Larval CNS57 ± 74 of 4 1.10None
Larval Salivary gland64 ± 34 of 4 1.22None
Larval midgut18 ± 14 of 4 0.35Down
Larval tubule22 ± 13 of 4 0.40Down
Larval hindgut47 ± 14 of 4 0.90Down
Larval fat body67 ± 154 of 4 1.30None
Larval trachea75 ± 74 of 4 1.43Up
Larval carcass51 ± 44 of 4 0.98None
S2 cells (growing)470 ± 44 of 4 8.94Up
Whole fly52 ± 04 of 4

Looking for FBgn0052138. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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