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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052163 through 18771 annotations produced 1 hits


Annotation Number : CG32163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052163
Gbrowse : chr3L:16580432-16581239 (+) // 100.0 //
Probeset : 1630410_at
Accessions : protein= NP_730181;, nucleotide= NM_168675;
FlyMine data for FBgn0052163.
VDRC has 3 RNAi stocks for FBgn0052163 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 34 of 4 1.00None
Head82 44 of 4 1.10None
Eye92 54 of 4 1.19None
Thoracicoabdominal ganglion106 34 of 4 1.40Up
Salivary gland167 84 of 4 2.14Up
Crop118 34 of 4 1.50Up
Midgut64 64 of 4 0.80None
Tubule83 44 of 4 1.10None
Hindgut93 24 of 4 1.20None
Heart150 134 of 4 1.93Up
Fat body105 154 of 4 1.35Up
Ovary67 14 of 4 0.90None
Testis309 124 of 4 4.00Up
Male accessory glands153 34 of 4 2.00Up
Virgin spermatheca119 64 of 4 1.53Up
Mated spermatheca130 74 of 4 1.67Up
Adult carcass94 54 of 4 1.20None
Larval CNS81 64 of 4 1.05None
Larval Salivary gland100 64 of 4 1.29Up
Larval midgut42 34 of 4 0.54Down
Larval tubule68 54 of 4 0.90None
Larval hindgut68 24 of 4 0.88None
Larval fat body120 54 of 4 1.50Up
Larval trachea107 144 of 4 1.37Up
Larval carcass59 14 of 4 0.77None
S2 cells (growing)133 04 of 4 1.71Up
Whole fly78 64 of 4

Looking for FBgn0052163. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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