FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052176 through 18771 annotations produced 1 hits

(CG32176):

Annotation Number : CG32176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052176
Gbrowse : chr3L:17426969-17431071 (+) // 100.0 //
Probeset : 1641704_at
Accessions : protein= NP_730271;, nucleotide= NM_168733;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052176.
BDGP gene expression has embryonic in situ data for CG32176: 12 pix of staining in 15 body parts.
BioGrid reports that CG32176 interacts with CG8933 .
VDRC has 2 RNAi stocks for FBgn0052176 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	172 ± 10	4 of 4	2.00	Up
Head	82 ± 7	4 of 4	0.90	None
Eye	144 ± 4	4 of 4	1.64	Up
Thoracicoabdominal ganglion	166 ± 9	4 of 4	1.90	Up
Salivary gland	82 ± 7	4 of 4	0.94	None
Crop	67 ± 2	4 of 4	0.80	Down
Midgut	44 ± 2	4 of 4	0.50	Down
Tubule	57 ± 2	4 of 4	0.60	Down
Hindgut	57 ± 2	4 of 4	0.70	Down
Heart	53 ± 5	4 of 4	0.60	Down
Fat body	44 ± 3	4 of 4	0.51	Down
Ovary	221 ± 3	4 of 4	2.50	Up
Testis	59 ± 4	4 of 4	0.70	Down
Male accessory glands	138 ± 5	4 of 4	1.60	Up
Virgin spermatheca	54 ± 2	4 of 4	0.62	Down
Mated spermatheca	58 ± 2	4 of 4	0.67	Down
Adult carcass	46 ± 3	4 of 4	0.50	Down
Larval CNS	204 ± 28	4 of 4	2.33	Up
Larval Salivary gland	96 ± 3	4 of 4	1.10	None
Larval midgut	40 ± 0	4 of 4	0.46	Down
Larval tubule	57 ± 1	4 of 4	0.60	Down
Larval hindgut	63 ± 5	4 of 4	0.72	Down
Larval fat body	50 ± 2	4 of 4	0.60	Down
Larval trachea	93 ± 3	4 of 4	1.07	None
Larval carcass	60 ± 2	4 of 4	0.68	Down
S2 cells (growing)	126 ± 3	4 of 4	1.44	Up
Whole fly	88 ± 2	4 of 4

Looking for FBgn0052176. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720