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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052179 through 18771 annotations produced 1 hits



spitz2 (Krn):

Annotation Number : CG32179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052179
Gbrowse : chr3L:17642663-17647376 (-) // 100.0 //
Probeset : 1628325_at
Accessions : protein= NP_524129;, nucleotide= NM_079405;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence
Interpro : 0005154 // epidermal growth factor receptor binding // inferred from sequence or structural similarity /// 0008083 // gr
FlyMine data for FBgn0052179.
BDGP gene expression has embryonic in situ data for Keren: 4 pix of staining in 1 body parts.
BioGrid reports that CG32179 interacts with CG9375 CG10079 .
VDRC has 5 RNAi stocks for FBgn0052179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 34 of 4 1.00None
Head97 54 of 4 1.30Up
Eye254 54 of 4 3.38Up
Thoracicoabdominal ganglion108 44 of 4 1.40Up
Salivary gland306 104 of 4 4.07Up
Crop73 24 of 4 1.00None
Midgut102 64 of 4 1.40Up
Tubule241 134 of 4 3.20Up
Hindgut163 14 of 4 2.20Up
Heart30 44 of 4 0.41Down
Fat body31 44 of 4 0.41Down
Ovary108 24 of 4 1.40Up
Testis76 44 of 4 1.00None
Male accessory glands325 44 of 4 4.30Up
Virgin spermatheca94 44 of 4 1.25Up
Mated spermatheca108 134 of 4 1.44None
Adult carcass47 24 of 4 0.60Down
Larval CNS59 14 of 4 0.79Down
Larval Salivary gland74 54 of 4 0.98None
Larval midgut93 14 of 4 1.24Up
Larval tubule222 104 of 4 2.90Up
Larval hindgut188 94 of 4 2.50Up
Larval fat body30 44 of 4 0.40Down
Larval trachea90 194 of 4 1.20None
Larval carcass56 64 of 4 0.75Down
S2 cells (growing)36 34 of 4 0.49Down
Whole fly75 34 of 4

Looking for FBgn0052179. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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