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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052187 through 18771 annotations produced 1 hits


Annotation Number : CG32187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052187
Gbrowse : chr3L:17798039-17799465 (-) // 100.0 //
Probeset : 1625582_at
Accessions : protein= NP_730303;, nucleotide= NM_168749;
FlyMine data for FBgn0052187.
VDRC has 3 RNAi stocks for FBgn0052187 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 24 of 416.20Up
Head17 24 of 4 4.40Up
Eye15 24 of 4 3.76Up
Thoracicoabdominal ganglion95 24 of 423.70Up
Salivary gland10 40 of 4 2.60None
Crop2 10 of 4 0.60None
Midgut1 00 of 4 0.40None
Tubule3 00 of 4 0.80Down
Hindgut3 10 of 4 0.70None
Heart4 00 of 4 1.16None
Fat body7 61 of 4 1.83None
Ovary0 00 of 4 0.20None
Testis6 10 of 4 1.70None
Male accessory glands2 10 of 4 0.60None
Virgin spermatheca12 13 of 4 3.16Up
Mated spermatheca14 23 of 4 3.47Up
Adult carcass5 20 of 4 1.40None
Larval CNS106 84 of 426.37Up
Larval Salivary gland3 00 of 4 0.96None
Larval midgut1 00 of 4 0.43None
Larval tubule9 10 of 4 2.30None
Larval hindgut0 00 of 4 0.20None
Larval fat body11 00 of 4 2.80Up
Larval trachea0 00 of 4 0.19None
Larval carcass7 20 of 4 1.81None
S2 cells (growing)1 00 of 4 0.48None
Whole fly4 20 of 4

Looking for FBgn0052187. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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