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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052189 through 18771 annotations produced 2 hits



/// (CG32188 /// CG32189):

Annotation Number : CG32189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052188 /// FBgn0052189
Gbrowse : chr3L:17827843-17828274 (-) // 100.0 //
Probeset : 1625762_s_at
Accessions : protein= NP_730308; /// NP_730309;, nucleotide= NM_168751; /// NM_168752;
FlyMine data for FBgn0052188 /// FBgn0052189.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 22 of 4 0.60Down
Head24 ± 60 of 4 0.70None
Eye15 ± 12 of 4 0.44Down
Thoracicoabdominal ganglion35 ± 43 of 4 1.00None
Salivary gland176 ± 183 of 4 5.08Up
Crop51 ± 40 of 4 1.50Up
Midgut83 ± 80 of 4 2.40Up
Tubule28 ± 12 of 4 0.80Down
Hindgut41 ± 24 of 4 1.20None
Heart20 ± 33 of 4 0.58Down
Fat body54 ± 173 of 4 1.57None
Ovary20 ± 24 of 4 0.60Down
Testis21 ± 34 of 4 0.60Down
Male accessory glands66 ± 62 of 4 1.90Up
Virgin spermatheca40 ± 22 of 4 1.17None
Mated spermatheca42 ± 63 of 4 1.23None
Adult carcass53 ± 30 of 4 1.50Up
Larval CNS33 ± 84 of 4 0.96None
Larval Salivary gland50 ± 64 of 4 1.46None
Larval midgut56 ± 50 of 4 1.61Up
Larval tubule31 ± 33 of 4 0.90None
Larval hindgut50 ± 24 of 4 1.46Up
Larval fat body70 ± 33 of 4 2.00Up
Larval trachea26 ± 43 of 4 0.77None
Larval carcass33 ± 11 of 4 0.97None
S2 cells (growing)36 ± 34 of 4 1.06None
Whole fly34 ± 31 of 4



(CG32189):

Annotation Number : CG32189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052189
Gbrowse : chr3L:17827843-17828274 (-) // 100.0 //
Probeset : 1636516_at
Accessions : protein= NP_730308; /// NP_730309;, nucleotide= NM_168751; /// NM_168752;
FlyMine data for FBgn0052189.
VDRC has 4 RNAi stocks for FBgn0052189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.80None
Head4 ± 10 of 4 0.80None
Eye3 ± 10 of 4 0.60None
Thoracicoabdominal ganglion5 ± 10 of 4 0.90None
Salivary gland28 ± 53 of 4 4.60Up
Crop7 ± 21 of 4 1.10None
Midgut6 ± 00 of 4 1.10None
Tubule8 ± 10 of 4 1.30None
Hindgut6 ± 20 of 4 1.10None
Heart6 ± 10 of 4 1.08None
Fat body12 ± 72 of 4 1.93None
Ovary4 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.30Down
Male accessory glands8 ± 20 of 4 1.40None
Virgin spermatheca13 ± 03 of 4 2.24Up
Mated spermatheca13 ± 14 of 4 2.19Up
Adult carcass11 ± 20 of 4 1.80None
Larval CNS6 ± 42 of 4 1.07None
Larval Salivary gland11 ± 14 of 4 1.85Up
Larval midgut8 ± 20 of 4 1.40None
Larval tubule6 ± 10 of 4 1.00None
Larval hindgut8 ± 02 of 4 1.29None
Larval fat body11 ± 22 of 4 1.80None
Larval trachea7 ± 22 of 4 1.20None
Larval carcass4 ± 10 of 4 0.75None
S2 cells (growing)4 ± 00 of 4 0.79None
Whole fly6 ± 00 of 4

Looking for FBgn0052189. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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