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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052191 through 18771 annotations produced 1 hits



(CG32191):

Annotation Number : CG32191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052191
Gbrowse : chr3L:17799549-17801895 (-) // 100.0 //
Probeset : 1639222_at
Accessions : protein= NP_730304;, nucleotide= NM_168750;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003943 // N-acetylgalactosamine-4-sulfatase ac
FlyMine data for FBgn0052191.
Homophila reports that CG32191 is a close match (8e-11) to human gene ARSA (NP_001078897), a gene associated with Metachromatic leukodystrophy, 250100 (3).
VDRC has 3 RNAi stocks for FBgn0052191 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 13 of 4 0.20Down
Head162 74 of 4 3.60Up
Eye111 144 of 4 2.46Up
Thoracicoabdominal ganglion13 20 of 4 0.30Down
Salivary gland439 354 of 4 9.68Up
Crop21 20 of 4 0.50Down
Midgut1 00 of 4 0.00Down
Tubule54 54 of 4 1.20None
Hindgut59 44 of 4 1.30None
Heart170 214 of 4 3.75Up
Fat body430 544 of 4 9.49Up
Ovary2 00 of 4 0.00Down
Testis15 11 of 4 0.30Down
Male accessory glands14 10 of 4 0.30Down
Virgin spermatheca352 294 of 4 7.77Up
Mated spermatheca401 314 of 4 8.84Up
Adult carcass234 214 of 4 5.20Up
Larval CNS11 31 of 4 0.26Down
Larval Salivary gland140 104 of 4 3.10Up
Larval midgut4 10 of 4 0.10Down
Larval tubule254 64 of 4 5.60Up
Larval hindgut146 124 of 4 3.23Up
Larval fat body193 174 of 4 4.30Up
Larval trachea17 64 of 4 0.38Down
Larval carcass364 644 of 4 8.05Up
S2 cells (growing)5 10 of 4 0.11Down
Whole fly45 34 of 4

Looking for FBgn0052191. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime