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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052192 through 18771 annotations produced 1 hits


(CG32192):

Annotation Number : CG32192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052192
Gbrowse : chr3L:18033416-18034152 (+) // 100.0 //
Probeset : 1623707_a_at
Accessions : protein= NP_730325; /// NP_730326;, nucleotide= NM_168759; /// NM_168760;
FlyMine data for FBgn0052192.
VDRC has 3 RNAi stocks for FBgn0052192 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland3 ± 00 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut3 ± 01 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body9 ± 91 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis1999 ± 814 of 4 7.80Up
Male accessory glands6 ± 21 of 4 0.00Down
Virgin spermatheca3 ± 00 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass11 ± 30 of 4 0.00Down
Larval CNS3 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.00Down
Larval tubule5 ± 11 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.01Down
Larval fat body361 ± 1994 of 4 1.40None
Larval trachea9 ± 121 of 4 0.04Down
Larval carcass2 ± 10 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly256 ± 134 of 4

Looking for FBgn0052192. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime