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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052194 through 18771 annotations produced 1 hits



():

Annotation Number : CG32194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:18078403-18080158 (-) // 100.0 //
Probeset : 1635180_at
Accessions : protein= NP_001097636;, nucleotide= NM_001104166;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.30None
Head2 00 of 4 1.50None
Eye2 00 of 4 1.33None
Thoracicoabdominal ganglion3 10 of 4 1.60None
Salivary gland1 00 of 4 0.78None
Crop3 10 of 4 1.80None
Midgut1 10 of 4 0.80None
Tubule1 00 of 4 0.90None
Hindgut2 00 of 4 1.10None
Heart7 02 of 4 3.84Up
Fat body9 21 of 4 4.83Up
Ovary0 00 of 4 0.40None
Testis1 10 of 4 1.00None
Male accessory glands3 10 of 4 1.70None
Virgin spermatheca6 10 of 4 3.58None
Mated spermatheca4 00 of 4 2.59Up
Adult carcass5 10 of 4 2.60None
Larval CNS2 00 of 4 1.08None
Larval Salivary gland1 00 of 4 0.89None
Larval midgut2 10 of 4 1.09None
Larval tubule1 10 of 4 0.80None
Larval hindgut2 00 of 4 1.03None
Larval fat body28 54 of 414.90Up
Larval trachea1 10 of 4 0.93None
Larval carcass1 00 of 4 0.76None
S2 cells (growing)1 00 of 4 0.70None
Whole fly1 00 of 4

Looking for FBgn0052194. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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