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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052195 through 18771 annotations produced 1 hits



(CG32195):

Annotation Number : CG32195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052195
Gbrowse : chr3L:18106069-18108860 (+) // 100.0 //
Probeset : 1640590_at
Accessions : protein= NP_730328;, nucleotide= NM_168762;
FlyMine data for FBgn0052195.
VDRC has 2 RNAi stocks for FBgn0052195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 54 of 4 2.30Up
Head99 ± 64 of 4 1.40Up
Eye50 ± 44 of 4 0.74None
Thoracicoabdominal ganglion200 ± 54 of 4 2.90Up
Salivary gland10 ± 40 of 4 0.16Down
Crop36 ± 04 of 4 0.50Down
Midgut67 ± 34 of 4 1.00None
Tubule2070 ± 1234 of 430.20Up
Hindgut33 ± 24 of 4 0.50Down
Heart137 ± 84 of 4 2.00Up
Fat body133 ± 84 of 4 1.95Up
Ovary22 ± 34 of 4 0.30Down
Testis9 ± 01 of 4 0.10Down
Male accessory glands43 ± 62 of 4 0.60None
Virgin spermatheca55 ± 74 of 4 0.80None
Mated spermatheca73 ± 94 of 4 1.07None
Adult carcass87 ± 54 of 4 1.30None
Larval CNS154 ± 214 of 4 2.25Up
Larval Salivary gland9 ± 20 of 4 0.14Down
Larval midgut6 ± 10 of 4 0.10Down
Larval tubule1762 ± 1324 of 425.70Up
Larval hindgut17 ± 04 of 4 0.26Down
Larval fat body12 ± 40 of 4 0.20Down
Larval trachea11 ± 23 of 4 0.17Down
Larval carcass4 ± 10 of 4 0.07Down
S2 cells (growing)17 ± 13 of 4 0.25Down
Whole fly68 ± 84 of 4

Looking for FBgn0052195. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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