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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052196 through 18771 annotations produced 1 hits



(CG32196):

Annotation Number : CG32196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052196
Gbrowse : chr3L:18452060-18453416 (-) // 100.0 //
Probeset : 1636151_at
Accessions : protein= NP_730334;, nucleotide= NM_168764;
FlyMine data for FBgn0052196.
VDRC has 1 RNAi stocks for FBgn0052196 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 24 of 4 1.20None
Head46 ± 74 of 4 1.30None
Eye64 ± 44 of 4 1.84Up
Thoracicoabdominal ganglion46 ± 64 of 4 1.30None
Salivary gland630 ± 294 of 417.94Up
Crop68 ± 64 of 4 2.00Up
Midgut108 ± 124 of 4 3.10Up
Tubule751 ± 284 of 421.40Up
Hindgut67 ± 14 of 4 1.90Up
Heart91 ± 54 of 4 2.61Up
Fat body97 ± 134 of 4 2.77Up
Ovary31 ± 14 of 4 0.90None
Testis17 ± 14 of 4 0.50Down
Male accessory glands60 ± 44 of 4 1.70Up
Virgin spermatheca81 ± 34 of 4 2.32Up
Mated spermatheca82 ± 44 of 4 2.33Up
Adult carcass61 ± 24 of 4 1.70Up
Larval CNS20 ± 24 of 4 0.59Down
Larval Salivary gland102 ± 124 of 4 2.91Up
Larval midgut138 ± 74 of 4 3.93Up
Larval tubule427 ± 224 of 412.20Up
Larval hindgut71 ± 44 of 4 2.03Up
Larval fat body88 ± 74 of 4 2.50Up
Larval trachea51 ± 34 of 4 1.47Up
Larval carcass82 ± 114 of 4 2.35Up
S2 cells (growing)44 ± 24 of 4 1.26None
Whole fly35 ± 34 of 4

Looking for FBgn0052196. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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