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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052198 through 18771 annotations produced 1 hits



(CG32198):

Annotation Number : CG32198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052198
Gbrowse : chr3L:18520089-18520500 (+) // 100.0 //
Probeset : 1636183_at
Accessions : protein= NP_730339;, nucleotide= NM_168767;
FlyMine data for FBgn0052198.
VDRC has 2 RNAi stocks for FBgn0052198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.50Down
Head2 ± 00 of 4 0.20Down
Eye6 ± 20 of 4 0.54None
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland1914 ± 3274 of 4163.25Up
Crop35 ± 112 of 4 3.10None
Midgut9 ± 10 of 4 0.80None
Tubule5 ± 10 of 4 0.50Down
Hindgut4 ± 10 of 4 0.40None
Heart5 ± 10 of 4 0.45None
Fat body20 ± 80 of 4 1.78None
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 00 of 4 0.40Down
Male accessory glands10 ± 10 of 4 0.90None
Virgin spermatheca13 ± 10 of 4 1.14None
Mated spermatheca13 ± 20 of 4 1.13None
Adult carcass26 ± 51 of 4 2.30None
Larval CNS10 ± 10 of 4 0.93None
Larval Salivary gland8748 ± 4994 of 4746.16Up
Larval midgut8 ± 10 of 4 0.72None
Larval tubule4 ± 10 of 4 0.40None
Larval hindgut10 ± 10 of 4 0.88None
Larval fat body13 ± 40 of 4 1.10None
Larval trachea137 ± 2353 of 411.69None
Larval carcass9 ± 20 of 4 0.77None
S2 cells (growing)13 ± 10 of 4 1.15None
Whole fly11 ± 21 of 4

Looking for FBgn0052198. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime