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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052203 through 18771 annotations produced 1 hits

CG32203 (Spn75F):

Annotation Number : CG32203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052203
Gbrowse : chr3L:19121033-19129591 (-) // 100.0 //
Probeset : 1633266_at
Accessions : protein= NP_001036614;, nucleotide= NM_001043149;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0052203.
Homophila reports that CG32203 is a close match (6e-15) to human gene SERPINI1;PI12 (NP_005016), a gene associated with Encephalopathy, familial, with neuroserpin inclusion bodies, 604218 (3).
VDRC has 3 RNAi stocks for FBgn0052203 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head4 11 of 4 0.00Down
Eye1 10 of 4 0.01Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland3 00 of 4 0.02Down
Crop6 11 of 4 0.00Down
Midgut7 12 of 4 0.00Down
Tubule6 10 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart3 00 of 4 0.02Down
Fat body8 34 of 4 0.06Down
Ovary2 00 of 4 0.00Down
Testis15 52 of 4 0.10Down
Male accessory glands8625 1934 of 456.90Up
Virgin spermatheca9 03 of 4 0.06Down
Mated spermatheca9 23 of 4 0.06Down
Adult carcass29 63 of 4 0.20Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut5 12 of 4 0.03Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.02Down
Larval fat body6 11 of 4 0.00Down
Larval trachea3 20 of 4 0.02Down
Larval carcass5 00 of 4 0.04Down
S2 cells (growing)4 10 of 4 0.03Down
Whole fly151 164 of 4

Looking for FBgn0052203. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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