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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052206 through 18771 annotations produced 1 hits



(CG32206):

Annotation Number : CG32206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052206
Gbrowse : chr3L:19333420-19405992 (-) // 100.0 //
Probeset : 1628159_a_at
Accessions : protein= NP_730403;, nucleotide= NM_168794;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052206.
BioGrid reports that CG32206 interacts with CG5661 .
VDRC has 2 RNAi stocks for FBgn0052206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain399 ± 204 of 436.70Up
Head72 ± 74 of 4 6.70Up
Eye54 ± 64 of 4 5.03Up
Thoracicoabdominal ganglion366 ± 94 of 433.70Up
Salivary gland8 ± 12 of 4 0.80None
Crop4 ± 11 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.30Down
Hindgut2 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.22Down
Fat body14 ± 24 of 4 1.29None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.40None
Virgin spermatheca6 ± 03 of 4 0.64None
Mated spermatheca9 ± 32 of 4 0.86None
Adult carcass7 ± 20 of 4 0.70None
Larval CNS192 ± 114 of 417.73Up
Larval Salivary gland4 ± 00 of 4 0.44Down
Larval midgut4 ± 00 of 4 0.40Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.15Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea2 ± 21 of 4 0.22Down
Larval carcass1 ± 00 of 4 0.17Down
S2 cells (growing)42 ± 14 of 4 3.88Up
Whole fly10 ± 14 of 4

Looking for FBgn0052206. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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