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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052221 through 18771 annotations produced 1 hits


Annotation Number : CG32221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052221
Gbrowse : chr3L:19827780-19829516 (+) // 100.0 //
Probeset : 1633598_at
Accessions : protein= NP_730456;, nucleotide= NM_168820;
FlyMine data for FBgn0052221.
TRiP has 1 RNAi stocks for FBgn0052221 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052221 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 44 of 4 1.30Up
Head120 114 of 4 1.30None
Eye175 24 of 4 1.95Up
Thoracicoabdominal ganglion193 94 of 4 2.10Up
Salivary gland115 94 of 4 1.28None
Crop195 174 of 4 2.20Up
Midgut153 54 of 4 1.70Up
Tubule134 54 of 4 1.50Up
Hindgut118 64 of 4 1.30Up
Heart122 94 of 4 1.36Up
Fat body140 164 of 4 1.55Up
Ovary112 44 of 4 1.20Up
Testis159 64 of 4 1.80Up
Male accessory glands59 54 of 4 0.70Down
Virgin spermatheca139 44 of 4 1.55Up
Mated spermatheca172 64 of 4 1.91Up
Adult carcass109 64 of 4 1.20None
Larval CNS121 84 of 4 1.34Up
Larval Salivary gland83 24 of 4 0.92None
Larval midgut127 84 of 4 1.42Up
Larval tubule120 34 of 4 1.30Up
Larval hindgut83 84 of 4 0.92None
Larval fat body141 124 of 4 1.60Up
Larval trachea61 94 of 4 0.69Down
Larval carcass51 54 of 4 0.57Down
S2 cells (growing)122 44 of 4 1.36Up
Whole fly90 54 of 4

Looking for FBgn0052221. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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