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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052228 through 18771 annotations produced 1 hits



(CG32228):

Annotation Number : CG32228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052228
Gbrowse : chr3L:20258913-20261661 (+) // 100.0 //
Probeset : 1640212_at
Accessions : protein= NP_730504;, nucleotide= NM_168839;
FlyMine data for FBgn0052228.
VDRC has 2 RNAi stocks for FBgn0052228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 13 of 4 0.40None
Head3 ± 00 of 4 0.30Down
Eye2 ± 00 of 4 0.24Down
Thoracicoabdominal ganglion6 ± 01 of 4 0.60None
Salivary gland19 ± 32 of 4 1.81None
Crop7 ± 12 of 4 0.70None
Midgut2 ± 00 of 4 0.20Down
Tubule10 ± 02 of 4 1.00None
Hindgut6 ± 13 of 4 0.60None
Heart6 ± 12 of 4 0.60None
Fat body33 ± 104 of 4 3.11Up
Ovary2 ± 00 of 4 0.20Down
Testis175 ± 44 of 416.60Up
Male accessory glands8 ± 32 of 4 0.80None
Virgin spermatheca18 ± 14 of 4 1.73Up
Mated spermatheca28 ± 94 of 4 2.64None
Adult carcass8 ± 31 of 4 0.80None
Larval CNS18 ± 94 of 4 1.71None
Larval Salivary gland11 ± 32 of 4 1.11None
Larval midgut4 ± 10 of 4 0.46Down
Larval tubule7 ± 02 of 4 0.70None
Larval hindgut9 ± 14 of 4 0.89None
Larval fat body20 ± 112 of 4 1.90None
Larval trachea4 ± 21 of 4 0.46Down
Larval carcass4 ± 01 of 4 0.38Down
S2 cells (growing)3 ± 00 of 4 0.30Down
Whole fly10 ± 14 of 4

Looking for FBgn0052228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime