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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052230 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase MLRQ (CG32230):

Annotation Number : CG32230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052230
Gbrowse : chr3L:23332424-23334700 (+) // 100.0 //
Probeset : 1635784_a_at
Accessions : protein= NP_730777; /// NP_730778;, nucleotide= NM_168988; /// NM_168989;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0052230.
BioGrid reports that CG32230 interacts with CG6905 .
VDRC has 3 RNAi stocks for FBgn0052230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3247 ± 904 of 4 0.80None
Head4213 ± 904 of 4 1.10None
Eye5074 ± 1964 of 4 1.31Up
Thoracicoabdominal ganglion4266 ± 864 of 4 1.10None
Salivary gland13802 ± 10094 of 4 3.56Up
Crop4491 ± 2464 of 4 1.20None
Midgut5405 ± 1984 of 4 1.40Up
Tubule4439 ± 1314 of 4 1.10Up
Hindgut5051 ± 2074 of 4 1.30Up
Heart5805 ± 3484 of 4 1.50Up
Fat body5879 ± 7324 of 4 1.52Up
Ovary2639 ± 514 of 4 0.70Down
Testis1531 ± 434 of 4 0.40Down
Male accessory glands4656 ± 1674 of 4 1.20Up
Virgin spermatheca5212 ± 2314 of 4 1.34Up
Mated spermatheca5323 ± 1564 of 4 1.37Up
Adult carcass6655 ± 3324 of 4 1.70Up
Larval CNS2515 ± 1184 of 4 0.65Down
Larval Salivary gland5942 ± 1984 of 4 1.53Up
Larval midgut6313 ± 1704 of 4 1.63Up
Larval tubule4793 ± 1614 of 4 1.20Up
Larval hindgut4944 ± 474 of 4 1.28Up
Larval fat body3483 ± 3214 of 4 0.90None
Larval trachea3522 ± 1694 of 4 0.91None
Larval carcass4776 ± 3854 of 4 1.23None
S2 cells (growing)2427 ± 304 of 4 0.63Down
Whole fly3876 ± 1964 of 4

Looking for FBgn0052230. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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