Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052238 through 18771 annotations produced 1 hits



(CG32238):

Annotation Number : CG32238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052238
Gbrowse : chr3L:4648671-4650135 (+) // 100.0 //
Probeset : 1627981_at
Accessions : protein= NP_729025;, nucleotide= NM_168100;
Interpro : 0004835 // tubulin-tyrosine ligase activity // inferred from sequence or structural similarity /// 0004835 // tubulin-ty
FlyMine data for FBgn0052238.
BioGrid reports that CG32238 interacts with CG7742 .
VDRC has 3 RNAi stocks for FBgn0052238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.10Down
Head5 ± 11 of 4 0.10Down
Eye6 ± 10 of 4 0.13Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.10Down
Salivary gland13 ± 30 of 4 0.25Down
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 21 of 4 0.10Down
Heart4 ± 10 of 4 0.09Down
Fat body7 ± 20 of 4 0.15Down
Ovary1 ± 00 of 4 0.00Down
Testis769 ± 214 of 414.70Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca7 ± 11 of 4 0.14Down
Mated spermatheca6 ± 11 of 4 0.13Down
Adult carcass12 ± 14 of 4 0.20Down
Larval CNS2 ± 00 of 4 0.05Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut4 ± 10 of 4 0.08Down
Larval tubule8 ± 11 of 4 0.20Down
Larval hindgut6 ± 11 of 4 0.13Down
Larval fat body83 ± 504 of 4 1.60None
Larval trachea6 ± 11 of 4 0.13Down
Larval carcass3 ± 00 of 4 0.06Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly52 ± 34 of 4

Looking for FBgn0052238. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime