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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052241 through 18771 annotations produced 2 hits



(CG32241):

Annotation Number : CG32241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052241
Gbrowse : chr3L:4465225-4466857 (-) // 100.0 //
Probeset : 1626558_at
Accessions : protein= NP_729000;, nucleotide= NM_168087;
FlyMine data for FBgn0052241.
VDRC has 3 RNAi stocks for FBgn0052241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 20 of 4 1.60None
Head2 00 of 4 0.70None
Eye8 30 of 4 1.85None
Thoracicoabdominal ganglion6 10 of 4 1.40None
Salivary gland2 00 of 4 0.55None
Crop3 00 of 4 0.70None
Midgut9 40 of 4 2.10None
Tubule4 10 of 4 1.00None
Hindgut2 00 of 4 0.50None
Heart5 10 of 4 1.16None
Fat body10 40 of 4 2.33None
Ovary7 10 of 4 1.60None
Testis3 10 of 4 0.70None
Male accessory glands5 20 of 4 1.10None
Virgin spermatheca1 00 of 4 0.22None
Mated spermatheca1 00 of 4 0.27None
Adult carcass3 10 of 4 0.80None
Larval CNS5 40 of 4 1.19None
Larval Salivary gland18 40 of 4 4.21None
Larval midgut12 40 of 4 2.71None
Larval tubule4 20 of 4 1.10None
Larval hindgut263 594 of 459.29Up
Larval fat body3 10 of 4 0.70None
Larval trachea1374 5024 of 4308.81Up
Larval carcass3926 4144 of 4882.26Up
S2 cells (growing)8 10 of 4 1.95Up
Whole fly4 10 of 4



(CG32241):

Annotation Number : CG32241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052241
Gbrowse : chr3L:4465225-4466857 (-) // 100.0 //
Probeset : 1632948_x_at
Accessions : protein= NP_729000;, nucleotide= NM_168087;
FlyMine data for FBgn0052241.
VDRC has 3 RNAi stocks for FBgn0052241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 30 of 4 1.60None
Head7 10 of 4 1.00None
Eye3 00 of 4 0.50None
Thoracicoabdominal ganglion5 00 of 4 0.80None
Salivary gland10 10 of 4 1.45None
Crop5 10 of 4 0.80None
Midgut16 30 of 4 2.30None
Tubule3 00 of 4 0.50Down
Hindgut5 00 of 4 0.80None
Heart5 00 of 4 0.73None
Fat body7 20 of 4 1.04None
Ovary8 30 of 4 1.20None
Testis2 00 of 4 0.30None
Male accessory glands6 00 of 4 0.80None
Virgin spermatheca3 00 of 4 0.42None
Mated spermatheca2 00 of 4 0.38None
Adult carcass3 00 of 4 0.50None
Larval CNS12 100 of 4 1.68None
Larval Salivary gland42 40 of 4 5.85Up
Larval midgut11 30 of 4 1.62None
Larval tubule4 10 of 4 0.70None
Larval hindgut294 484 of 440.94Up
Larval fat body9 30 of 4 1.30None
Larval trachea467 1334 of 464.90Up
Larval carcass3699 3994 of 4513.86Up
S2 cells (growing)12 40 of 4 1.76None
Whole fly7 20 of 4

Looking for FBgn0052241. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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