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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052243 through 18771 annotations produced 1 hits



(CG32243):

Annotation Number : CG32243
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052243
Gbrowse : chr3L:4539299-4541238 (-) // 100.0 //
Probeset : 1637407_at
Accessions : protein= NP_729014;, nucleotide= NM_168094;
FlyMine data for FBgn0052243.
BDGP gene expression has embryonic in situ data for CG32243: 18 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0052243 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 ± 24 of 4 1.00None
Head116 ± 34 of 4 0.60Down
Eye221 ± 44 of 4 1.05None
Thoracicoabdominal ganglion149 ± 44 of 4 0.70Down
Salivary gland113 ± 64 of 4 0.54Down
Crop91 ± 54 of 4 0.40Down
Midgut114 ± 64 of 4 0.50Down
Tubule139 ± 124 of 4 0.70Down
Hindgut119 ± 44 of 4 0.60Down
Heart133 ± 74 of 4 0.63Down
Fat body100 ± 94 of 4 0.48Down
Ovary441 ± 54 of 4 2.10Up
Testis140 ± 74 of 4 0.70Down
Male accessory glands134 ± 74 of 4 0.60Down
Virgin spermatheca103 ± 94 of 4 0.49Down
Mated spermatheca126 ± 24 of 4 0.60Down
Adult carcass55 ± 34 of 4 0.30Down
Larval CNS411 ± 194 of 4 1.96Up
Larval Salivary gland130 ± 144 of 4 0.62Down
Larval midgut162 ± 34 of 4 0.77Down
Larval tubule436 ± 94 of 4 2.10Up
Larval hindgut251 ± 94 of 4 1.20Up
Larval fat body408 ± 374 of 4 1.90Up
Larval trachea161 ± 384 of 4 0.77None
Larval carcass110 ± 44 of 4 0.53Down
S2 cells (growing)493 ± 74 of 4 2.35Up
Whole fly210 ± 104 of 4

Looking for FBgn0052243. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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