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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052249 through 18771 annotations produced 1 hits


Annotation Number : CG32249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052249
Gbrowse : chr3L:4468351-4471032 (+) // 100.0 //
Probeset : 1630720_at
Accessions : protein= NP_729001;, nucleotide= NM_168088;
Interpro : 0004871 // signal transducer activity // inferred from sequence or structural similarity
FlyMine data for FBgn0052249.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.10None
Head3 10 of 4 0.90None
Eye49 134 of 412.31Up
Thoracicoabdominal ganglion3 20 of 4 1.00None
Salivary gland15 70 of 4 3.88None
Crop10 20 of 4 2.60None
Midgut6 10 of 4 1.50None
Tubule9 10 of 4 2.40Up
Hindgut5 10 of 4 1.30None
Heart4 20 of 4 1.14None
Fat body7 30 of 4 1.80None
Ovary4 10 of 4 1.20None
Testis3 10 of 4 0.90None
Male accessory glands3 10 of 4 1.00None
Virgin spermatheca8 10 of 4 2.09None
Mated spermatheca9 20 of 4 2.31None
Adult carcass12 30 of 4 3.00None
Larval CNS10 61 of 4 2.70None
Larval Salivary gland9 41 of 4 2.28None
Larval midgut12 00 of 4 3.07Up
Larval tubule7 20 of 4 1.80None
Larval hindgut1358 3034 of 4335.46Up
Larval fat body16 50 of 4 4.00None
Larval trachea3601 5434 of 4889.21Up
Larval carcass5232 4504 of 41291.99Up
S2 cells (growing)4 20 of 4 1.18None
Whole fly4 10 of 4

Looking for FBgn0052249. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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