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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052250 through 18771 annotations produced 1 hits



(CG32250):

Annotation Number : CG32250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052250
Gbrowse : chr3L:4318756-4321120 (+) // 100.0 //
Probeset : 1638224_at
Accessions : protein= NP_728982;, nucleotide= NM_168081;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0052250.
Homophila reports that CG32250 is a close match (3e-11) to human gene UCP1 (NP_068605), a gene associated with {Obesity, susceptibility to}, 601665 (3).
VDRC has 2 RNAi stocks for FBgn0052250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 ± 24 of 4 1.30Up
Head130 ± 44 of 4 1.00None
Eye88 ± 24 of 4 0.71Down
Thoracicoabdominal ganglion150 ± 44 of 4 1.20Up
Salivary gland62 ± 24 of 4 0.50Down
Crop683 ± 44 of 4 5.40Up
Midgut158 ± 34 of 4 1.30Up
Tubule84 ± 34 of 4 0.70Down
Hindgut275 ± 44 of 4 2.20Up
Heart178 ± 54 of 4 1.43Up
Fat body186 ± 204 of 4 1.49Up
Ovary127 ± 44 of 4 1.00None
Testis228 ± 124 of 4 1.80Up
Male accessory glands96 ± 34 of 4 0.80Down
Virgin spermatheca68 ± 44 of 4 0.55Down
Mated spermatheca72 ± 54 of 4 0.57Down
Adult carcass181 ± 124 of 4 1.40Up
Larval CNS170 ± 24 of 4 1.36Up
Larval Salivary gland36 ± 14 of 4 0.29Down
Larval midgut224 ± 204 of 4 1.79Up
Larval tubule55 ± 44 of 4 0.40Down
Larval hindgut61 ± 14 of 4 0.49Down
Larval fat body79 ± 64 of 4 0.60Down
Larval trachea58 ± 34 of 4 0.46Down
Larval carcass40 ± 34 of 4 0.32Down
S2 cells (growing)107 ± 24 of 4 0.85Down
Whole fly125 ± 34 of 4

Looking for FBgn0052250. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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