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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052259 through 18771 annotations produced 1 hits



(CG32259):

Annotation Number : CG32259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052259
Gbrowse : chr3L:4069349-4070893 (+) // 100.0 //
Probeset : 1626328_at
Accessions : protein= NP_001163341; /// NP_728929;, nucleotide= NM_001169870; /// NM_168054;
FlyMine data for FBgn0052259.
VDRC has 2 RNAi stocks for FBgn0052259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.10Down
Eye19 ± 34 of 4 0.52Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland9 ± 31 of 4 0.24Down
Crop0 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart14 ± 24 of 4 0.37Down
Fat body6 ± 40 of 4 0.17Down
Ovary6 ± 02 of 4 0.20Down
Testis509 ± 64 of 413.20Up
Male accessory glands9 ± 13 of 4 0.20Down
Virgin spermatheca4 ± 00 of 4 0.12Down
Mated spermatheca3 ± 11 of 4 0.09Down
Adult carcass8 ± 41 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland2 ± 00 of 4 0.07Down
Larval midgut2 ± 10 of 4 0.06Down
Larval tubule3 ± 11 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.10Down
Larval fat body116 ± 394 of 4 3.00None
Larval trachea6 ± 51 of 4 0.16Down
Larval carcass2 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly38 ± 14 of 4

Looking for FBgn0052259. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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