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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052264 through 18771 annotations produced 1 hits



(CG32264):

Annotation Number : CG32264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052264
Gbrowse : chr3L:3717216-3801288 (-) // 99.66 //
Probeset : 1627816_a_at
Accessions : protein= NP_001097494; /// NP_001097495; /// NP_728896; /// NP_728897; /// NP_728898;, nucleotide= NM_001104024; /// NM_001104025; /// NM_168037; /// NM_168038; /// NM_168039;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052264.
BDGP gene expression has embryonic in situ data for CG32264: 11 pix of staining in 4 body parts.
BioGrid reports that CG32264 interacts with CG6576 CG32356 CG4027 CG4818 CG8280 CG9083 Dmel CG34353 .
TRiP has 1 RNAi stocks for FBgn0052264 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052264 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain735 ± 154 of 4 5.90Up
Head177 ± 174 of 4 1.40Up
Eye423 ± 314 of 4 3.40Up
Thoracicoabdominal ganglion621 ± 154 of 4 5.00Up
Salivary gland140 ± 104 of 4 1.13None
Crop252 ± 94 of 4 2.00Up
Midgut86 ± 54 of 4 0.70Down
Tubule93 ± 54 of 4 0.80Down
Hindgut172 ± 114 of 4 1.40Up
Heart179 ± 134 of 4 1.45Up
Fat body51 ± 74 of 4 0.41Down
Ovary140 ± 74 of 4 1.10None
Testis213 ± 54 of 4 1.70Up
Male accessory glands106 ± 104 of 4 0.90None
Virgin spermatheca65 ± 24 of 4 0.53Down
Mated spermatheca79 ± 74 of 4 0.64Down
Adult carcass113 ± 94 of 4 0.90None
Larval CNS368 ± 214 of 4 2.96Up
Larval Salivary gland128 ± 94 of 4 1.03None
Larval midgut139 ± 94 of 4 1.13None
Larval tubule127 ± 114 of 4 1.00None
Larval hindgut163 ± 194 of 4 1.31None
Larval fat body50 ± 114 of 4 0.40Down
Larval trachea282 ± 544 of 4 2.28Up
Larval carcass219 ± 244 of 4 1.77Up
S2 cells (growing)44 ± 14 of 4 0.36Down
Whole fly124 ± 64 of 4

Looking for FBgn0052264. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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