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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052277 through 18771 annotations produced 1 hits


(CG32277):

Annotation Number : CG32277
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052277
Gbrowse : chr3L:3204663-3205449 (-) // 100.0 //
Probeset : 1638955_at
Accessions : protein= NP_728835;, nucleotide= NM_168002;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052277.
Homophila reports that CG32277 is a close match (2e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
VDRC has 1 RNAi stocks for FBgn0052277 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland3 ± 00 of 4 0.07Down
Crop2 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4742 ± 2194 of 4110.88Up
Mated spermatheca4846 ± 2364 of 4113.31Up
Adult carcass14 ± 60 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly42 ± 84 of 4

Looking for FBgn0052277. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime