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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052280 through 18771 annotations produced 1 hits



(CG32280):

Annotation Number : CG32280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052280
Gbrowse : chr3L:3165181-3169080 (+) // 100.0 //
Probeset : 1627930_s_at
Accessions : protein= NP_728818; /// NP_728819; /// NP_728820;, nucleotide= NM_167992; /// NM_167993; /// NM_167994;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0052280.
BioGrid reports that CG32280 interacts with CG3858 .
VDRC has 4 RNAi stocks for FBgn0052280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain254 ± 184 of 4 0.50Down
Head954 ± 444 of 4 2.00Up
Eye1019 ± 474 of 4 2.09Up
Thoracicoabdominal ganglion302 ± 94 of 4 0.60Down
Salivary gland3825 ± 924 of 4 7.83Up
Crop2150 ± 874 of 4 4.40Up
Midgut356 ± 114 of 4 0.70Down
Tubule2557 ± 254 of 4 5.20Up
Hindgut1637 ± 454 of 4 3.40Up
Heart1977 ± 554 of 4 4.05Up
Fat body1234 ± 714 of 4 2.53Up
Ovary51 ± 54 of 4 0.10Down
Testis163 ± 54 of 4 0.30Down
Male accessory glands1162 ± 114 of 4 2.40Up
Virgin spermatheca1242 ± 274 of 4 2.54Up
Mated spermatheca1645 ± 384 of 4 3.37Up
Adult carcass1539 ± 404 of 4 3.20Up
Larval CNS247 ± 324 of 4 0.51Down
Larval Salivary gland2883 ± 1274 of 4 5.91Up
Larval midgut412 ± 304 of 4 0.84None
Larval tubule2471 ± 534 of 4 5.10Up
Larval hindgut1370 ± 124 of 4 2.81Up
Larval fat body713 ± 734 of 4 1.50None
Larval trachea2085 ± 474 of 4 4.27Up
Larval carcass1751 ± 874 of 4 3.59Up
S2 cells (growing)1101 ± 434 of 4 2.26Up
Whole fly488 ± 84 of 4

Looking for FBgn0052280. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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