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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052281 through 18771 annotations produced 1 hits



(CG32281):

Annotation Number : CG32281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052281
Gbrowse : chr3L:3169374-3170909 (+) // 100.0 //
Probeset : 1632818_at
Accessions : protein= NP_728821;, nucleotide= NM_167995;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008175 // tRNA methyltransferase activ
FlyMine data for FBgn0052281.
VDRC has 3 RNAi stocks for FBgn0052281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 14 of 4 1.00None
Head66 24 of 4 0.70Down
Eye90 54 of 4 0.98None
Thoracicoabdominal ganglion105 44 of 4 1.10None
Salivary gland91 14 of 4 0.99None
Crop71 24 of 4 0.80Down
Midgut117 74 of 4 1.30Up
Tubule80 34 of 4 0.90Down
Hindgut74 14 of 4 0.80Down
Heart41 14 of 4 0.45Down
Fat body52 44 of 4 0.57Down
Ovary146 44 of 4 1.60Up
Testis140 34 of 4 1.50Up
Male accessory glands176 64 of 4 1.90Up
Virgin spermatheca53 24 of 4 0.57Down
Mated spermatheca72 24 of 4 0.79Down
Adult carcass60 14 of 4 0.70Down
Larval CNS99 84 of 4 1.08None
Larval Salivary gland90 54 of 4 0.97None
Larval midgut42 34 of 4 0.46Down
Larval tubule56 34 of 4 0.60Down
Larval hindgut57 44 of 4 0.62Down
Larval fat body58 64 of 4 0.60Down
Larval trachea92 94 of 4 1.00None
Larval carcass63 54 of 4 0.68Down
S2 cells (growing)83 14 of 4 0.90None
Whole fly92 44 of 4

Looking for FBgn0052281. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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