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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052283 through 18771 annotations produced 1 hits

drosomycin-E (dro3):

Annotation Number : CG32283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052283
Gbrowse : chr3L:3315033-3315249 (+) // 100.0 //
Probeset : 1624558_at
Accessions : protein= NP_728861;, nucleotide= NM_168020;
FlyMine data for FBgn0052283.
VDRC has 6 RNAi stocks for FBgn0052283 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10None
Head3 10 of 4 0.10None
Eye3 10 of 4 0.13None
Thoracicoabdominal ganglion3 10 of 4 0.10None
Salivary gland10 31 of 4 0.39None
Crop4 11 of 4 0.20None
Midgut147 104 of 4 5.50Up
Tubule6 11 of 4 0.30Down
Hindgut2 10 of 4 0.10None
Heart2 00 of 4 0.08None
Fat body2 10 of 4 0.11None
Ovary3 10 of 4 0.10None
Testis14 14 of 4 0.50None
Male accessory glands10 32 of 4 0.40None
Virgin spermatheca2 00 of 4 0.10None
Mated spermatheca2 00 of 4 0.10None
Adult carcass6 20 of 4 0.20None
Larval CNS2 00 of 4 0.09None
Larval Salivary gland7 21 of 4 0.27None
Larval midgut51 54 of 4 1.93None
Larval tubule6 01 of 4 0.30None
Larval hindgut2 00 of 4 0.10None
Larval fat body13 14 of 4 0.50None
Larval trachea3 00 of 4 0.14None
Larval carcass4 00 of 4 0.18None
S2 cells (growing)1 00 of 4 0.06None
Whole fly26 93 of 4

Looking for FBgn0052283. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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