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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052284 through 18771 annotations produced 1 hits



(CG32284):

Annotation Number : CG32284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052284
Gbrowse : chr3L:3186663-3187249 (+) // 100.0 //
Probeset : 1639457_at
Accessions : protein= NP_728826;, nucleotide= NM_167997;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0052284.
BDGP gene expression has embryonic in situ data for CG32284: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.10None
Head5 ± 00 of 4 0.10None
Eye3 ± 10 of 4 0.04None
Thoracicoabdominal ganglion20 ± 14 of 4 0.20None
Salivary gland10 ± 30 of 4 0.11None
Crop7 ± 21 of 4 0.10None
Midgut524 ± 304 of 4 5.60Up
Tubule181 ± 354 of 4 1.90Up
Hindgut1356 ± 904 of 414.50Up
Heart4 ± 12 of 4 0.05None
Fat body7 ± 20 of 4 0.08None
Ovary2 ± 00 of 4 0.00None
Testis6 ± 03 of 4 0.10None
Male accessory glands11 ± 21 of 4 0.10None
Virgin spermatheca8 ± 01 of 4 0.09None
Mated spermatheca6 ± 21 of 4 0.07None
Adult carcass14 ± 32 of 4 0.20None
Larval CNS6 ± 13 of 4 0.07None
Larval Salivary gland5 ± 11 of 4 0.06None
Larval midgut4252 ± 4534 of 445.48Up
Larval tubule110 ± 54 of 4 1.20None
Larval hindgut3041 ± 2624 of 432.53Up
Larval fat body142 ± 324 of 4 1.50None
Larval trachea7 ± 40 of 4 0.08None
Larval carcass8 ± 14 of 4 0.09None
S2 cells (growing)4 ± 11 of 4 0.05None
Whole fly93 ± 294 of 4

Looking for FBgn0052284. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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