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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052302 through 18771 annotations produced 1 hits



(CG32302):

Annotation Number : CG32302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052302
Gbrowse : chr3L:2268826-2269837 (+) // 100.0 //
Probeset : 1639143_at
Accessions : protein= NP_728732;, nucleotide= NM_167944;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0052302.
VDRC has 3 RNAi stocks for FBgn0052302 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.32None
Thoracicoabdominal ganglion3 ± 10 of 4 0.30None
Salivary gland12 ± 20 of 4 1.39None
Crop1 ± 00 of 4 0.10Down
Midgut130 ± 74 of 414.10Up
Tubule2 ± 00 of 4 0.20Down
Hindgut2 ± 00 of 4 0.30Down
Heart4 ± 00 of 4 0.47None
Fat body4 ± 30 of 4 0.47None
Ovary1 ± 00 of 4 0.20Down
Testis4 ± 10 of 4 0.50None
Male accessory glands2 ± 10 of 4 0.30None
Virgin spermatheca6 ± 12 of 4 0.65None
Mated spermatheca3 ± 00 of 4 0.40None
Adult carcass11 ± 20 of 4 1.20None
Larval CNS2 ± 10 of 4 0.25Down
Larval Salivary gland5 ± 10 of 4 0.54None
Larval midgut6251 ± 2274 of 4675.81Up
Larval tubule7 ± 10 of 4 0.80None
Larval hindgut6 ± 21 of 4 0.69None
Larval fat body59 ± 343 of 4 6.40None
Larval trachea50 ± 882 of 4 5.47None
Larval carcass7 ± 20 of 4 0.84None
S2 cells (growing)2 ± 00 of 4 0.24Down
Whole fly9 ± 21 of 4

Looking for FBgn0052302. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime