FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052304 through 18771 annotations produced 1 hits

CG32304 (obst-I):

Annotation Number : CG32304
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052304
Gbrowse : chr3L:2267869-2268529 (+) // 100.0 //
Probeset : 1630848_at
Accessions : protein= NP_728731;, nucleotide= NM_167943;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0008061 // chitin binding // inferred from reviewed
FlyMine data for FBgn0052304.
VDRC has 1 RNAi stocks for FBgn0052304 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 1	0 of 4	0.50	None
Head	1 ± 1	0 of 4	0.50	None
Eye	1 ± 0	0 of 4	0.39	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.30	None
Salivary gland	4 ± 2	0 of 4	1.29	None
Crop	1 ± 0	0 of 4	0.40	None
Midgut	4 ± 1	0 of 4	1.40	None
Tubule	3 ± 0	0 of 4	1.10	None
Hindgut	2 ± 1	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.51	None
Fat body	5 ± 4	0 of 4	1.60	None
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	5 ± 3	0 of 4	1.70	None
Virgin spermatheca	1 ± 0	0 of 4	0.58	None
Mated spermatheca	2 ± 1	0 of 4	0.68	None
Adult carcass	5 ± 1	0 of 4	1.80	None
Larval CNS	1 ± 1	0 of 4	0.37	None
Larval Salivary gland	6 ± 0	0 of 4	2.02	Up
Larval midgut	1106 ± 26	4 of 4	343.01	Up
Larval tubule	3 ± 0	0 of 4	1.10	None
Larval hindgut	1 ± 0	0 of 4	0.42	None
Larval fat body	2 ± 1	0 of 4	0.80	None
Larval trachea	4 ± 2	0 of 4	1.52	None
Larval carcass	2 ± 1	0 of 4	0.71	None
S2 cells (growing)	1 ± 0	0 of 4	0.50	None
Whole fly	3 ± 0	0 of 4

Looking for FBgn0052304. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720