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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052305 through 18771 annotations produced 1 hits



(CG32305):

Annotation Number : CG32305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052305
Gbrowse : chr3L:2248634-2252729 (+) // 100.0 //
Probeset : 1626511_at
Accessions : protein= NP_728725;, nucleotide= NM_167940;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // inferr
FlyMine data for FBgn0052305.
Homophila reports that CG32305 is a close match (5e-15) to human gene NPR2;ANPRB;AMDM (NP_003986), a gene associated with Acromesomelic dysplasia, Maroteaux type, 602875 (3).
VDRC has 3 RNAi stocks for FBgn0052305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.60None
Head1 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.29None
Thoracicoabdominal ganglion1 ± 00 of 4 0.30Down
Salivary gland6 ± 20 of 4 0.95None
Crop2 ± 00 of 4 0.30None
Midgut4 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.60Down
Hindgut2 ± 00 of 4 0.40None
Heart1 ± 00 of 4 0.18Down
Fat body2 ± 20 of 4 0.39None
Ovary1 ± 00 of 4 0.30None
Testis65 ± 34 of 410.20Up
Male accessory glands2 ± 00 of 4 0.40None
Virgin spermatheca4 ± 20 of 4 0.70None
Mated spermatheca3 ± 10 of 4 0.46None
Adult carcass5 ± 20 of 4 0.80None
Larval CNS3 ± 11 of 4 0.50None
Larval Salivary gland6 ± 10 of 4 1.04None
Larval midgut0 ± 00 of 4 0.13Down
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut2 ± 10 of 4 0.44None
Larval fat body15 ± 30 of 4 2.30None
Larval trachea5 ± 20 of 4 0.85None
Larval carcass3 ± 10 of 4 0.58None
S2 cells (growing)1 ± 00 of 4 0.19Down
Whole fly6 ± 10 of 4

Looking for FBgn0052305. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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