FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0052311 through 18771 annotations produced 7 hits

D-Titin (zormin):

Annotation Number : CG11953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2149711-2150089 (-) // 100.0 //
Probeset : 1626603_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	15 ± 1	3 of 4	1.00	None
Head	22 ± 2	4 of 4	1.50	None
Eye	9 ± 1	2 of 4	0.66	None
Thoracicoabdominal ganglion	19 ± 3	1 of 4	1.30	None
Salivary gland	31 ± 9	0 of 4	2.12	None
Crop	42 ± 3	4 of 4	2.90	Up
Midgut	11 ± 2	0 of 4	0.80	None
Tubule	13 ± 0	0 of 4	0.90	None
Hindgut	34 ± 4	4 of 4	2.30	Up
Heart	26 ± 2	4 of 4	1.79	Up
Fat body	22 ± 5	3 of 4	1.49	None
Ovary	14 ± 2	3 of 4	0.90	None
Testis	6 ± 2	0 of 4	0.50	None
Male accessory glands	45 ± 9	2 of 4	3.10	Up
Virgin spermatheca	33 ± 3	4 of 4	2.23	Up
Mated spermatheca	40 ± 4	4 of 4	2.72	Up
Adult carcass	24 ± 1	1 of 4	1.70	Up
Larval CNS	17 ± 4	4 of 4	1.17	None
Larval Salivary gland	16 ± 0	0 of 4	1.13	None
Larval midgut	5 ± 2	0 of 4	0.38	Down
Larval tubule	15 ± 2	0 of 4	1.00	None
Larval hindgut	19 ± 0	4 of 4	1.32	None
Larval fat body	16 ± 2	1 of 4	1.10	None
Larval trachea	38 ± 4	4 of 4	2.57	Up
Larval carcass	16 ± 2	3 of 4	1.12	None
S2 cells (growing)	11 ± 2	1 of 4	0.81	None
Whole fly	14 ± 2	0 of 4

D-Titin (zormin):

Annotation Number : CG32311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2128800-2136057 (-) // 100.0 //
Probeset : 1640817_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 1	4 of 4	0.80	None
Head	28 ± 3	4 of 4	1.40	None
Eye	22 ± 2	4 of 4	1.06	None
Thoracicoabdominal ganglion	21 ± 3	4 of 4	1.00	None
Salivary gland	47 ± 10	4 of 4	2.29	None
Crop	168 ± 3	4 of 4	8.10	Up
Midgut	30 ± 2	4 of 4	1.40	Up
Tubule	16 ± 0	1 of 4	0.80	Down
Hindgut	100 ± 3	4 of 4	4.80	Up
Heart	129 ± 6	4 of 4	6.21	Up
Fat body	50 ± 9	4 of 4	2.41	Up
Ovary	4 ± 0	0 of 4	0.20	Down
Testis	13 ± 1	4 of 4	0.60	Down
Male accessory glands	38 ± 6	4 of 4	1.80	None
Virgin spermatheca	51 ± 5	4 of 4	2.44	Up
Mated spermatheca	56 ± 5	4 of 4	2.71	Up
Adult carcass	68 ± 10	4 of 4	3.30	Up
Larval CNS	22 ± 1	4 of 4	1.08	None
Larval Salivary gland	116 ± 6	4 of 4	5.57	Up
Larval midgut	25 ± 1	4 of 4	1.22	None
Larval tubule	10 ± 2	0 of 4	0.50	Down
Larval hindgut	51 ± 4	4 of 4	2.46	Up
Larval fat body	8 ± 1	1 of 4	0.40	Down
Larval trachea	74 ± 6	4 of 4	3.57	Up
Larval carcass	123 ± 11	4 of 4	5.90	Up
S2 cells (growing)	37 ± 2	4 of 4	1.78	Up
Whole fly	20 ± 2	4 of 4

D-Titin (zormin):

Annotation Number : CG32309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2137174-2138470 (-) // 100.0 //
Probeset : 1628799_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.00	None
Head	0 ± 0	0 of 4	0.30	None
Eye	0 ± 0	0 of 4	0.49	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.30	None
Salivary gland	4 ± 2	0 of 4	2.60	None
Crop	1 ± 0	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.70	None
Tubule	3 ± 0	0 of 4	2.00	Up
Hindgut	3 ± 0	0 of 4	1.80	None
Heart	2 ± 0	0 of 4	1.26	None
Fat body	3 ± 2	0 of 4	1.74	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	3 ± 1	0 of 4	2.00	None
Male accessory glands	10 ± 2	0 of 4	6.00	Up
Virgin spermatheca	2 ± 0	0 of 4	1.17	None
Mated spermatheca	1 ± 0	0 of 4	0.53	None
Adult carcass	8 ± 1	0 of 4	4.50	Up
Larval CNS	1 ± 1	0 of 4	0.86	None
Larval Salivary gland	2 ± 1	0 of 4	1.28	None
Larval midgut	2 ± 1	0 of 4	1.57	None
Larval tubule	3 ± 2	0 of 4	1.70	None
Larval hindgut	4 ± 1	0 of 4	2.26	None
Larval fat body	2 ± 0	0 of 4	1.20	None
Larval trachea	1 ± 1	0 of 4	0.93	None
Larval carcass	1 ± 0	0 of 4	0.76	None
S2 cells (growing)	5 ± 1	0 of 4	3.24	Up
Whole fly	1 ± 0	0 of 4

D-Titin (zormin):

Annotation Number : CG32310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2126924-2128622 (-) // 100.0 //
Probeset : 1636349_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.40	None
Head	5 ± 1	0 of 4	1.20	None
Eye	1 ± 0	0 of 4	0.37	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.60	None
Salivary gland	7 ± 3	0 of 4	1.66	None
Crop	47 ± 11	4 of 4	10.10	Up
Midgut	1 ± 0	0 of 4	0.30	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	16 ± 1	1 of 4	3.60	Up
Heart	2 ± 0	0 of 4	0.62	None
Fat body	2 ± 2	0 of 4	0.52	None
Ovary	0 ± 0	0 of 4	0.10	None
Testis	1 ± 1	0 of 4	0.40	None
Male accessory glands	3 ± 1	0 of 4	0.70	None
Virgin spermatheca	1 ± 0	0 of 4	0.21	None
Mated spermatheca	0 ± 0	0 of 4	0.17	None
Adult carcass	21 ± 2	0 of 4	4.50	Up
Larval CNS	1 ± 1	0 of 4	0.34	None
Larval Salivary gland	4 ± 2	0 of 4	0.87	None
Larval midgut	5 ± 1	0 of 4	1.18	None
Larval tubule	1 ± 0	0 of 4	0.20	None
Larval hindgut	9 ± 1	0 of 4	1.97	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	2 ± 2	0 of 4	0.53	None
Larval carcass	13 ± 6	1 of 4	2.94	None
S2 cells (growing)	2 ± 0	0 of 4	0.43	None
Whole fly	4 ± 1	0 of 4

D-Titin (zormin):

Annotation Number : CG5699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2122618-2126614 (-) // 100.0 //
Probeset : 1623197_a_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	66 ± 0	4 of 4	0.40	Down
Head	187 ± 9	4 of 4	1.30	Up
Eye	44 ± 2	4 of 4	0.30	Down
Thoracicoabdominal ganglion	114 ± 4	4 of 4	0.80	Down
Salivary gland	27 ± 5	3 of 4	0.19	Down
Crop	1039 ± 28	4 of 4	6.90	Up
Midgut	49 ± 3	4 of 4	0.30	Down
Tubule	13 ± 0	3 of 4	0.10	Down
Hindgut	530 ± 12	4 of 4	3.50	Up
Heart	402 ± 32	4 of 4	2.69	Up
Fat body	52 ± 4	4 of 4	0.35	Down
Ovary	13 ± 1	4 of 4	0.10	Down
Testis	22 ± 1	4 of 4	0.10	Down
Male accessory glands	137 ± 4	4 of 4	0.90	None
Virgin spermatheca	52 ± 3	4 of 4	0.35	Down
Mated spermatheca	74 ± 5	4 of 4	0.50	Down
Adult carcass	446 ± 32	4 of 4	3.00	Up
Larval CNS	61 ± 4	4 of 4	0.41	Down
Larval Salivary gland	68 ± 5	4 of 4	0.46	Down
Larval midgut	72 ± 6	4 of 4	0.49	Down
Larval tubule	15 ± 1	4 of 4	0.10	Down
Larval hindgut	447 ± 11	4 of 4	2.99	Up
Larval fat body	14 ± 1	3 of 4	0.10	Down
Larval trachea	84 ± 24	4 of 4	0.56	Down
Larval carcass	686 ± 70	4 of 4	4.59	Up
S2 cells (growing)	7 ± 1	2 of 4	0.05	Down
Whole fly	149 ± 8	4 of 4

D-Titin (zormin):

Annotation Number : CG11952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2139571-2142104 (-) // 100.0 //
Probeset : 1627379_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.60	None
Head	2 ± 0	0 of 4	1.10	None
Eye	0 ± 0	0 of 4	0.31	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	6 ± 2	0 of 4	2.33	None
Crop	4 ± 2	0 of 4	1.70	None
Midgut	2 ± 1	0 of 4	0.90	None
Tubule	4 ± 0	0 of 4	1.50	None
Hindgut	5 ± 2	0 of 4	1.90	None
Heart	4 ± 1	0 of 4	1.57	None
Fat body	3 ± 3	0 of 4	1.33	None
Ovary	1 ± 0	0 of 4	0.50	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	3 ± 1	0 of 4	1.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.43	None
Mated spermatheca	1 ± 0	0 of 4	0.57	None
Adult carcass	1 ± 0	0 of 4	0.40	None
Larval CNS	1 ± 0	0 of 4	0.60	None
Larval Salivary gland	3 ± 0	0 of 4	1.19	None
Larval midgut	1 ± 0	0 of 4	0.42	None
Larval tubule	4 ± 1	0 of 4	1.60	None
Larval hindgut	4 ± 1	0 of 4	1.56	None
Larval fat body	3 ± 2	0 of 4	1.20	None
Larval trachea	2 ± 1	0 of 4	1.07	None
Larval carcass	7 ± 3	0 of 4	2.91	None
S2 cells (growing)	10 ± 1	0 of 4	3.94	Up
Whole fly	2 ± 1	0 of 4

D-Titin (zormin):

Annotation Number : CG32307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2118537-2119187 (-) // 100.0 //
Probeset : 1636934_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 2	0 of 4	0.40	Down
Head	45 ± 2	4 of 4	3.20	Up
Eye	32 ± 3	4 of 4	2.32	Up
Thoracicoabdominal ganglion	13 ± 1	0 of 4	0.90	None
Salivary gland	34 ± 12	0 of 4	2.46	None
Crop	87 ± 8	4 of 4	6.20	Up
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	0 ± 0	0 of 4	0.00	Down
Hindgut	54 ± 3	1 of 4	3.90	Up
Heart	8 ± 0	0 of 4	0.58	Down
Fat body	4 ± 3	0 of 4	0.30	Down
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	15 ± 2	2 of 4	1.10	None
Male accessory glands	56 ± 6	4 of 4	4.00	Up
Virgin spermatheca	85 ± 2	4 of 4	6.09	Up
Mated spermatheca	101 ± 9	4 of 4	7.19	Up
Adult carcass	28 ± 3	1 of 4	2.00	Up
Larval CNS	33 ± 2	4 of 4	2.38	Up
Larval Salivary gland	399 ± 4	4 of 4	28.34	Up
Larval midgut	15 ± 2	0 of 4	1.06	None
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	108 ± 3	4 of 4	7.72	Up
Larval fat body	1 ± 0	0 of 4	0.10	Down
Larval trachea	429 ± 127	4 of 4	30.48	Up
Larval carcass	205 ± 15	4 of 4	14.60	Up
S2 cells (growing)	102 ± 7	4 of 4	7.25	Up
Whole fly	14 ± 1	0 of 4

Looking for FBgn0052311. 7 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720