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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052311 through 18771 annotations produced 7 hits



D-Titin (zormin):

Annotation Number : CG32309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2137174-2138470 (-) // 100.0 //
Probeset : 1628799_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.00None
Head0 00 of 4 0.30None
Eye0 00 of 4 0.49None
Thoracicoabdominal ganglion2 10 of 4 1.30None
Salivary gland4 20 of 4 2.60None
Crop1 00 of 4 0.70None
Midgut1 00 of 4 0.70None
Tubule3 00 of 4 2.00Up
Hindgut3 00 of 4 1.80None
Heart2 00 of 4 1.26None
Fat body3 20 of 4 1.74None
Ovary0 00 of 4 0.30None
Testis3 10 of 4 2.00None
Male accessory glands10 20 of 4 6.00Up
Virgin spermatheca2 00 of 4 1.17None
Mated spermatheca1 00 of 4 0.53None
Adult carcass8 10 of 4 4.50Up
Larval CNS1 10 of 4 0.86None
Larval Salivary gland2 10 of 4 1.28None
Larval midgut2 10 of 4 1.57None
Larval tubule3 20 of 4 1.70None
Larval hindgut4 10 of 4 2.26None
Larval fat body2 00 of 4 1.20None
Larval trachea1 10 of 4 0.93None
Larval carcass1 00 of 4 0.76None
S2 cells (growing)5 10 of 4 3.24Up
Whole fly1 00 of 4



D-Titin (zormin):

Annotation Number : CG5699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2122618-2126614 (-) // 100.0 //
Probeset : 1623197_a_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 04 of 4 0.40Down
Head187 94 of 4 1.30Up
Eye44 24 of 4 0.30Down
Thoracicoabdominal ganglion114 44 of 4 0.80Down
Salivary gland27 53 of 4 0.19Down
Crop1039 284 of 4 6.90Up
Midgut49 34 of 4 0.30Down
Tubule13 03 of 4 0.10Down
Hindgut530 124 of 4 3.50Up
Heart402 324 of 4 2.69Up
Fat body52 44 of 4 0.35Down
Ovary13 14 of 4 0.10Down
Testis22 14 of 4 0.10Down
Male accessory glands137 44 of 4 0.90None
Virgin spermatheca52 34 of 4 0.35Down
Mated spermatheca74 54 of 4 0.50Down
Adult carcass446 324 of 4 3.00Up
Larval CNS61 44 of 4 0.41Down
Larval Salivary gland68 54 of 4 0.46Down
Larval midgut72 64 of 4 0.49Down
Larval tubule15 14 of 4 0.10Down
Larval hindgut447 114 of 4 2.99Up
Larval fat body14 13 of 4 0.10Down
Larval trachea84 244 of 4 0.56Down
Larval carcass686 704 of 4 4.59Up
S2 cells (growing)7 12 of 4 0.05Down
Whole fly149 84 of 4



D-Titin (zormin):

Annotation Number : CG32311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2128800-2136057 (-) // 100.0 //
Probeset : 1640817_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.80None
Head28 34 of 4 1.40None
Eye22 24 of 4 1.06None
Thoracicoabdominal ganglion21 34 of 4 1.00None
Salivary gland47 104 of 4 2.29None
Crop168 34 of 4 8.10Up
Midgut30 24 of 4 1.40Up
Tubule16 01 of 4 0.80Down
Hindgut100 34 of 4 4.80Up
Heart129 64 of 4 6.21Up
Fat body50 94 of 4 2.41Up
Ovary4 00 of 4 0.20Down
Testis13 14 of 4 0.60Down
Male accessory glands38 64 of 4 1.80None
Virgin spermatheca51 54 of 4 2.44Up
Mated spermatheca56 54 of 4 2.71Up
Adult carcass68 104 of 4 3.30Up
Larval CNS22 14 of 4 1.08None
Larval Salivary gland116 64 of 4 5.57Up
Larval midgut25 14 of 4 1.22None
Larval tubule10 20 of 4 0.50Down
Larval hindgut51 44 of 4 2.46Up
Larval fat body8 11 of 4 0.40Down
Larval trachea74 64 of 4 3.57Up
Larval carcass123 114 of 4 5.90Up
S2 cells (growing)37 24 of 4 1.78Up
Whole fly20 24 of 4



D-Titin (zormin):

Annotation Number : CG32307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2118537-2119187 (-) // 100.0 //
Probeset : 1636934_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 20 of 4 0.40Down
Head45 24 of 4 3.20Up
Eye32 34 of 4 2.32Up
Thoracicoabdominal ganglion13 10 of 4 0.90None
Salivary gland34 120 of 4 2.46None
Crop87 84 of 4 6.20Up
Midgut1 00 of 4 0.10Down
Tubule0 00 of 4 0.00Down
Hindgut54 31 of 4 3.90Up
Heart8 00 of 4 0.58Down
Fat body4 30 of 4 0.30Down
Ovary2 10 of 4 0.10Down
Testis15 22 of 4 1.10None
Male accessory glands56 64 of 4 4.00Up
Virgin spermatheca85 24 of 4 6.09Up
Mated spermatheca101 94 of 4 7.19Up
Adult carcass28 31 of 4 2.00Up
Larval CNS33 24 of 4 2.38Up
Larval Salivary gland399 44 of 428.34Up
Larval midgut15 20 of 4 1.06None
Larval tubule1 00 of 4 0.10Down
Larval hindgut108 34 of 4 7.72Up
Larval fat body1 00 of 4 0.10Down
Larval trachea429 1274 of 430.48Up
Larval carcass205 154 of 414.60Up
S2 cells (growing)102 74 of 4 7.25Up
Whole fly14 10 of 4



D-Titin (zormin):

Annotation Number : CG32310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2126924-2128622 (-) // 100.0 //
Probeset : 1636349_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head5 10 of 4 1.20None
Eye1 00 of 4 0.37None
Thoracicoabdominal ganglion3 10 of 4 0.60None
Salivary gland7 30 of 4 1.66None
Crop47 114 of 410.10Up
Midgut1 00 of 4 0.30None
Tubule1 00 of 4 0.30Down
Hindgut16 11 of 4 3.60Up
Heart2 00 of 4 0.62None
Fat body2 20 of 4 0.52None
Ovary0 00 of 4 0.10None
Testis1 10 of 4 0.40None
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca1 00 of 4 0.21None
Mated spermatheca0 00 of 4 0.17None
Adult carcass21 20 of 4 4.50Up
Larval CNS1 10 of 4 0.34None
Larval Salivary gland4 20 of 4 0.87None
Larval midgut5 10 of 4 1.18None
Larval tubule1 00 of 4 0.20None
Larval hindgut9 10 of 4 1.97None
Larval fat body1 00 of 4 0.40None
Larval trachea2 20 of 4 0.53None
Larval carcass13 61 of 4 2.94None
S2 cells (growing)2 00 of 4 0.43None
Whole fly4 10 of 4



D-Titin (zormin):

Annotation Number : CG11953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2149711-2150089 (-) // 100.0 //
Probeset : 1626603_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 13 of 4 1.00None
Head22 24 of 4 1.50None
Eye9 12 of 4 0.66None
Thoracicoabdominal ganglion19 31 of 4 1.30None
Salivary gland31 90 of 4 2.12None
Crop42 34 of 4 2.90Up
Midgut11 20 of 4 0.80None
Tubule13 00 of 4 0.90None
Hindgut34 44 of 4 2.30Up
Heart26 24 of 4 1.79Up
Fat body22 53 of 4 1.49None
Ovary14 23 of 4 0.90None
Testis6 20 of 4 0.50None
Male accessory glands45 92 of 4 3.10Up
Virgin spermatheca33 34 of 4 2.23Up
Mated spermatheca40 44 of 4 2.72Up
Adult carcass24 11 of 4 1.70Up
Larval CNS17 44 of 4 1.17None
Larval Salivary gland16 00 of 4 1.13None
Larval midgut5 20 of 4 0.38Down
Larval tubule15 20 of 4 1.00None
Larval hindgut19 04 of 4 1.32None
Larval fat body16 21 of 4 1.10None
Larval trachea38 44 of 4 2.57Up
Larval carcass16 23 of 4 1.12None
S2 cells (growing)11 21 of 4 0.81None
Whole fly14 20 of 4



D-Titin (zormin):

Annotation Number : CG11952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052311
Gbrowse : chr3L:2139571-2142104 (-) // 100.0 //
Probeset : 1627379_at
Accessions : protein= NP_001036577; /// NP_001036578; /// NP_001036579; /// NP_995962;, nucleotide= NM_001043112; /// NM_001043113; /// NM_001043114; /// NM_206240;
Interpro : 0005200 // structural constituent of cytoskeleton // inferred from sequence or structural similarity
FlyMine data for FBgn0052311.
TRiP has 1 RNAi stocks for FBgn0052311 available for purchase.
VDRC has 13 RNAi stocks for FBgn0052311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head2 00 of 4 1.10None
Eye0 00 of 4 0.31None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland6 20 of 4 2.33None
Crop4 20 of 4 1.70None
Midgut2 10 of 4 0.90None
Tubule4 00 of 4 1.50None
Hindgut5 20 of 4 1.90None
Heart4 10 of 4 1.57None
Fat body3 30 of 4 1.33None
Ovary1 00 of 4 0.50None
Testis0 00 of 4 0.30None
Male accessory glands3 10 of 4 1.40None
Virgin spermatheca1 00 of 4 0.43None
Mated spermatheca1 00 of 4 0.57None
Adult carcass1 00 of 4 0.40None
Larval CNS1 00 of 4 0.60None
Larval Salivary gland3 00 of 4 1.19None
Larval midgut1 00 of 4 0.42None
Larval tubule4 10 of 4 1.60None
Larval hindgut4 10 of 4 1.56None
Larval fat body3 20 of 4 1.20None
Larval trachea2 10 of 4 1.07None
Larval carcass7 30 of 4 2.91None
S2 cells (growing)10 10 of 4 3.94Up
Whole fly2 10 of 4

Looking for FBgn0052311. 7 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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