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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052313 through 18771 annotations produced 1 hits



(CG32313):

Annotation Number : CG32313
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052313
Gbrowse : chr3L:1544826-1545743 (-) // 100.0 //
Probeset : 1640961_at
Accessions : protein= NP_728625;, nucleotide= NM_167891;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0052313.
VDRC has 3 RNAi stocks for FBgn0052313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head3 00 of 4 0.00Down
Eye6 10 of 4 0.08Down
Thoracicoabdominal ganglion8 10 of 4 0.10Down
Salivary gland16 20 of 4 0.19Down
Crop20 24 of 4 0.20Down
Midgut4 10 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut12 21 of 4 0.10Down
Heart18 04 of 4 0.22Down
Fat body17 63 of 4 0.20Down
Ovary5 11 of 4 0.10Down
Testis807 324 of 4 9.40Up
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca7 11 of 4 0.09Down
Mated spermatheca6 10 of 4 0.07Down
Adult carcass18 11 of 4 0.20Down
Larval CNS8 14 of 4 0.10Down
Larval Salivary gland12 12 of 4 0.15Down
Larval midgut6 10 of 4 0.07Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut8 11 of 4 0.09Down
Larval fat body92 444 of 4 1.10None
Larval trachea11 73 of 4 0.13Down
Larval carcass10 11 of 4 0.12Down
S2 cells (growing)12 13 of 4 0.15Down
Whole fly85 104 of 4

Looking for FBgn0052313. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime