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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052320 through 18771 annotations produced 1 hits



(CG32320):

Annotation Number : CG32320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052320
Gbrowse : chr3L:1398603-1401028 (+) // 100.0 //
Probeset : 1637640_at
Accessions : protein= NP_001097472;, nucleotide= NM_001104002;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0052320.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.50None
Head0 ± 00 of 4 0.20None
Eye3 ± 10 of 4 0.82None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland2 ± 00 of 4 0.53None
Crop4 ± 10 of 4 0.90None
Midgut1 ± 10 of 4 0.40None
Tubule2 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.31None
Fat body1 ± 00 of 4 0.37None
Ovary0 ± 00 of 4 0.10None
Testis32 ± 14 of 4 7.10Up
Male accessory glands3 ± 10 of 4 0.80None
Virgin spermatheca2 ± 10 of 4 0.58None
Mated spermatheca2 ± 00 of 4 0.62None
Adult carcass2 ± 10 of 4 0.60None
Larval CNS1 ± 00 of 4 0.36None
Larval Salivary gland6 ± 20 of 4 1.48None
Larval midgut1 ± 00 of 4 0.35None
Larval tubule3 ± 10 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.38None
Larval fat body4 ± 20 of 4 1.00None
Larval trachea1 ± 00 of 4 0.32None
Larval carcass4 ± 10 of 4 0.90None
S2 cells (growing)45 ± 44 of 410.09Up
Whole fly4 ± 11 of 4

Looking for FBgn0052320. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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