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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052343 through 18771 annotations produced 1 hits



(CG32343):

Annotation Number : CG32343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052343
Gbrowse : chr3L:324981-327987 (-) // 100.0 //
Probeset : 1640064_at
Accessions : protein= NP_001137866; /// NP_728520;, nucleotide= NM_001144394; /// NM_167828;
Pathway : DNA-dependent // inferred from sequence or structural similarity"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity
FlyMine data for FBgn0052343.
BDGP gene expression has embryonic in situ data for CG32343: 4 pix of staining in 1 body parts.
Homophila reports that CG32343 is a close match (4e-11) to human gene ANK2;LQT4 (NP_066187), a gene associated with Cardiac arrhythmia, ankyrin-B-related, 600919 (3);Long QT syndrome-4, 600919 (3).
BioGrid reports that CG32343 interacts with CG6338 .
TRiP has 2 RNAi stocks for FBgn0052343 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 14 of 4 1.00None
Head40 ± 44 of 4 0.50Down
Eye29 ± 14 of 4 0.38Down
Thoracicoabdominal ganglion61 ± 64 of 4 0.80None
Salivary gland73 ± 73 of 4 0.96None
Crop58 ± 64 of 4 0.80None
Midgut49 ± 44 of 4 0.60Down
Tubule45 ± 24 of 4 0.60Down
Hindgut42 ± 44 of 4 0.60Down
Heart25 ± 14 of 4 0.33Down
Fat body36 ± 44 of 4 0.48Down
Ovary124 ± 64 of 4 1.60Up
Testis40 ± 64 of 4 0.50Down
Male accessory glands73 ± 34 of 4 1.00None
Virgin spermatheca41 ± 34 of 4 0.55Down
Mated spermatheca52 ± 54 of 4 0.69Down
Adult carcass29 ± 42 of 4 0.40Down
Larval CNS115 ± 134 of 4 1.51Up
Larval Salivary gland69 ± 44 of 4 0.90None
Larval midgut40 ± 34 of 4 0.53Down
Larval tubule47 ± 14 of 4 0.60Down
Larval hindgut33 ± 24 of 4 0.43Down
Larval fat body56 ± 34 of 4 0.70Down
Larval trachea58 ± 94 of 4 0.76Down
Larval carcass44 ± 54 of 4 0.59Down
S2 cells (growing)68 ± 24 of 4 0.90None
Whole fly76 ± 54 of 4

Looking for FBgn0052343. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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