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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052344 through 18771 annotations produced 1 hits



(CG32344):

Annotation Number : CG32344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052344
Gbrowse : chr3L:321231-324717 (-) // 100.0 //
Probeset : 1636073_at
Accessions : protein= NP_612028;, nucleotide= NM_138184;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0052344.
BDGP gene expression has embryonic in situ data for CG32344: 11 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0052344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 34 of 4 0.30Down
Head80 54 of 4 0.40Down
Eye62 44 of 4 0.34Down
Thoracicoabdominal ganglion64 44 of 4 0.40Down
Salivary gland64 24 of 4 0.35Down
Crop81 24 of 4 0.40Down
Midgut75 64 of 4 0.40Down
Tubule83 124 of 4 0.50Down
Hindgut63 34 of 4 0.30Down
Heart67 54 of 4 0.37Down
Fat body123 64 of 4 0.67Down
Ovary321 44 of 4 1.80Up
Testis28 04 of 4 0.20Down
Male accessory glands188 84 of 4 1.00None
Virgin spermatheca110 84 of 4 0.60Down
Mated spermatheca165 64 of 4 0.90None
Adult carcass65 54 of 4 0.40Down
Larval CNS209 64 of 4 1.14None
Larval Salivary gland116 94 of 4 0.63Down
Larval midgut52 24 of 4 0.28Down
Larval tubule38 34 of 4 0.20Down
Larval hindgut97 124 of 4 0.53Down
Larval fat body46 44 of 4 0.30Down
Larval trachea141 324 of 4 0.77None
Larval carcass103 274 of 4 0.57None
S2 cells (growing)134 54 of 4 0.74Down
Whole fly183 94 of 4

Looking for FBgn0052344. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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