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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052368 through 18771 annotations produced 1 hits



(CG32368):

Annotation Number : CG32368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052368
Gbrowse : chr3L:7908535-7908954 (+) // 100.0 //
Probeset : 1636566_at
Accessions : protein= NP_729310;, nucleotide= NM_168244;
FlyMine data for FBgn0052368.
VDRC has 2 RNAi stocks for FBgn0052368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 84 of 4 0.30None
Head39 ± 54 of 4 0.30Down
Eye35 ± 34 of 4 0.26Down
Thoracicoabdominal ganglion24 ± 54 of 4 0.20Down
Salivary gland8 ± 61 of 4 0.06Down
Crop6 ± 20 of 4 0.00Down
Midgut1050 ± 244 of 4 7.80Up
Tubule372 ± 264 of 4 2.80Up
Hindgut290 ± 174 of 4 2.20Up
Heart37 ± 44 of 4 0.28Down
Fat body51 ± 614 of 4 0.38None
Ovary1 ± 00 of 4 0.00Down
Testis11 ± 24 of 4 0.10Down
Male accessory glands28 ± 24 of 4 0.20Down
Virgin spermatheca62 ± 254 of 4 0.46None
Mated spermatheca303 ± 1614 of 4 2.25None
Adult carcass12 ± 22 of 4 0.10Down
Larval CNS3 ± 12 of 4 0.03Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut186 ± 374 of 4 1.38None
Larval tubule95 ± 254 of 4 0.70None
Larval hindgut284 ± 204 of 4 2.11Up
Larval fat body62 ± 124 of 4 0.50None
Larval trachea5 ± 30 of 4 0.04Down
Larval carcass5 ± 10 of 4 0.04Down
S2 cells (growing)1363 ± 424 of 410.11Up
Whole fly134 ± 294 of 4

Looking for FBgn0052368. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime