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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052372 through 18771 annotations produced 1 hits



(CG32372):

Annotation Number : CG32372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052372
Gbrowse : chr3L:7512587-7521116 (+) // 100.0 //
Probeset : 1633286_at
Accessions : protein= NP_729265;, nucleotide= NM_168218;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0052372.
BDGP gene expression has embryonic in situ data for CG32372: 45 pix of staining in 17 body parts.
Homophila reports that CG32372 is a close match (6e-15) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
TRiP has 1 RNAi stocks for FBgn0052372 available for purchase.
VDRC has 1 RNAi stocks for FBgn0052372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain241 ± 204 of 4 4.00Up
Head388 ± 254 of 4 6.50Up
Eye892 ± 384 of 414.88Up
Thoracicoabdominal ganglion281 ± 104 of 4 4.70Up
Salivary gland5 ± 20 of 4 0.08Down
Crop10 ± 24 of 4 0.20Down
Midgut2 ± 00 of 4 0.00Down
Tubule6 ± 12 of 4 0.10Down
Hindgut20 ± 24 of 4 0.30Down
Heart2489 ± 1824 of 441.53Up
Fat body451 ± 524 of 4 7.53Up
Ovary0 ± 00 of 4 0.00Down
Testis8 ± 14 of 4 0.10Down
Male accessory glands22 ± 54 of 4 0.40Down
Virgin spermatheca201 ± 104 of 4 3.36Up
Mated spermatheca294 ± 74 of 4 4.91Up
Adult carcass182 ± 64 of 4 3.00Up
Larval CNS229 ± 434 of 4 3.82Up
Larval Salivary gland9 ± 12 of 4 0.16Down
Larval midgut37 ± 54 of 4 0.63None
Larval tubule31 ± 24 of 4 0.50Down
Larval hindgut144 ± 124 of 4 2.41Up
Larval fat body511 ± 204 of 4 8.50Up
Larval trachea41 ± 524 of 4 0.70None
Larval carcass142 ± 204 of 4 2.38Up
S2 cells (growing)2 ± 01 of 4 0.03Down
Whole fly60 ± 74 of 4

Looking for FBgn0052372. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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