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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052373 through 18771 annotations produced 1 hits



Ankyrin 2 /// (Ank2 /// CG32373):

Annotation Number : CG32373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052373
Gbrowse : chr3L:7643682-7752224 (+) // 100.0 //
Probeset : 1630163_at
Accessions : protein= NP_729293; /// NP_996019;, nucleotide= NM_168229; /// NM_206297;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0052373.
BDGP gene expression has embryonic in situ data for CG32373: 4 pix of staining in 1 body parts.
Homophila reports that CG32373 is a close match (2e-11) to human gene LRP8;APOER2;MCI1 (NP_150643), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
VDRC has 2 RNAi stocks for FBgn0052373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.50Down
Head11 ± 20 of 4 0.80None
Eye4 ± 10 of 4 0.33Down
Thoracicoabdominal ganglion10 ± 20 of 4 0.80None
Salivary gland7 ± 20 of 4 0.51None
Crop2 ± 10 of 4 0.20Down
Midgut12 ± 30 of 4 0.90None
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.30Down
Heart11 ± 32 of 4 0.85None
Fat body13 ± 40 of 4 0.95None
Ovary19 ± 23 of 4 1.40None
Testis6 ± 02 of 4 0.50Down
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca7 ± 20 of 4 0.52None
Mated spermatheca10 ± 20 of 4 0.79None
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.10Down
Larval Salivary gland4 ± 10 of 4 0.31Down
Larval midgut225 ± 134 of 416.39Up
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut125 ± 104 of 4 9.11Up
Larval fat body9 ± 20 of 4 0.70None
Larval trachea15 ± 12 of 4 1.10None
Larval carcass116 ± 214 of 4 8.47Up
S2 cells (growing)3 ± 10 of 4 0.27Down
Whole fly13 ± 11 of 4

Looking for FBgn0052373. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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