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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052376 through 18771 annotations produced 1 hits



(CG32376):

Annotation Number : CG32376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052376
Gbrowse : chr3L:7534681-7535557 (-) // 100.0 //
Probeset : 1638532_at
Accessions : protein= NP_729271;, nucleotide= NM_168223;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052376.
Homophila reports that CG32376 is a close match (5e-12) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 2 RNAi stocks for FBgn0052376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.90None
Head2 ± 00 of 4 1.30None
Eye3 ± 10 of 4 2.50None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland3 ± 10 of 4 2.11None
Crop1 ± 00 of 4 0.90None
Midgut9 ± 30 of 4 6.10None
Tubule3 ± 00 of 4 2.10Up
Hindgut1 ± 00 of 4 1.00None
Heart1 ± 00 of 4 0.95None
Fat body4 ± 30 of 4 2.61None
Ovary1 ± 00 of 4 1.20None
Testis1 ± 00 of 4 0.90None
Male accessory glands4 ± 10 of 4 2.90None
Virgin spermatheca3 ± 10 of 4 2.10None
Mated spermatheca1 ± 00 of 4 1.15None
Adult carcass3 ± 20 of 4 2.40None
Larval CNS2 ± 10 of 4 1.50None
Larval Salivary gland3 ± 10 of 4 2.47None
Larval midgut3 ± 00 of 4 2.13None
Larval tubule2 ± 10 of 4 1.60None
Larval hindgut2 ± 10 of 4 1.84None
Larval fat body4 ± 30 of 4 3.10None
Larval trachea3 ± 22 of 4 2.39None
Larval carcass6 ± 30 of 4 4.44None
S2 cells (growing)3 ± 00 of 4 1.97None
Whole fly1 ± 00 of 4

Looking for FBgn0052376. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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