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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0052392 through 18771 annotations produced 1 hits



(CG32392):

Annotation Number : CG32392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052392
Gbrowse : chr3L:6749735-6756346 (-) // 100.0 //
Probeset : 1640789_a_at
Accessions : protein= NP_648059; /// NP_729190;, nucleotide= NM_139802; /// NM_168180;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from seq
FlyMine data for FBgn0052392.
BDGP gene expression has embryonic in situ data for CG32392: 11 pix of staining in 2 body parts.
BioGrid reports that CG32392 interacts with CG9911 CG7135 CG9949 .
VDRC has 3 RNAi stocks for FBgn0052392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 24 of 4 0.80Down
Head29 44 of 4 0.50Down
Eye13 23 of 4 0.22Down
Thoracicoabdominal ganglion47 34 of 4 0.80Down
Salivary gland14 00 of 4 0.24Down
Crop6 10 of 4 0.10Down
Midgut7 10 of 4 0.10Down
Tubule7 00 of 4 0.10Down
Hindgut8 20 of 4 0.10Down
Heart18 04 of 4 0.30Down
Fat body18 113 of 4 0.31Down
Ovary4 00 of 4 0.10Down
Testis801 234 of 413.50Up
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.11Down
Mated spermatheca6 00 of 4 0.11Down
Adult carcass18 13 of 4 0.30Down
Larval CNS23 54 of 4 0.39Down
Larval Salivary gland9 20 of 4 0.16Down
Larval midgut4 00 of 4 0.08Down
Larval tubule9 11 of 4 0.20Down
Larval hindgut5 21 of 4 0.09Down
Larval fat body104 464 of 4 1.80None
Larval trachea7 22 of 4 0.13Down
Larval carcass14 22 of 4 0.24Down
S2 cells (growing)5 20 of 4 0.09Down
Whole fly59 24 of 4

Looking for FBgn0052392. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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