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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0052404 through 18771 annotations produced 1 hits

CG32404 (Cpr65Aw):

Annotation Number : CG32404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052404
Gbrowse : chr3L:6135064-6135483 (-) // 100.0 //
Probeset : 1628713_at
Accessions : protein= NP_729147;, nucleotide= NM_168159;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0052404.
VDRC has 1 RNAi stocks for FBgn0052404 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head2 00 of 4 0.30None
Eye5 10 of 4 0.86None
Thoracicoabdominal ganglion7 10 of 4 1.20None
Salivary gland20 30 of 4 3.30Up
Crop6 20 of 4 1.10None
Midgut5 20 of 4 0.90None
Tubule5 00 of 4 0.90Down
Hindgut9 10 of 4 1.60None
Heart3 00 of 4 0.53None
Fat body3 30 of 4 0.51None
Ovary2 00 of 4 0.40None
Testis5 10 of 4 0.90None
Male accessory glands6 20 of 4 1.10None
Virgin spermatheca5 10 of 4 0.80None
Mated spermatheca4 10 of 4 0.65None
Adult carcass8 30 of 4 1.40None
Larval CNS6 10 of 4 0.97None
Larval Salivary gland7 10 of 4 1.20None
Larval midgut7 20 of 4 1.24None
Larval tubule7 10 of 4 1.20None
Larval hindgut68 84 of 410.83Up
Larval fat body8 30 of 4 1.40None
Larval trachea123 504 of 419.51Up
Larval carcass1726 2624 of 4273.02Up
S2 cells (growing)8 10 of 4 1.38None
Whole fly6 10 of 4

Looking for FBgn0052404. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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